Factsheet for TraesCS7D01G321100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G324700.2	Wheat	nucleus, plastid	97.51	97.17
TraesCS7B01G225200.1	Wheat	nucleus, plastid	95.38	95.72
HORVU7Hr1G077650.5	Barley	nucleus, plastid	91.47	91.64
Os08t0105000-01	Rice	nucleus	52.58	52.58
Zm00001d049736_P001	Maize	nucleus, plastid	45.29	45.7
Zm00001d035008_P001	Maize	nucleus, plastid	44.94	45.59
KXG24174	Sorghum	nucleus	42.98	43.92
GSMUA_Achr5P01220_001	Banana	nucleus	36.06	37.18
GSMUA_Achr11P...	Banana	nucleus	35.17	33.56
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	21.49	30.87
PGSC0003DMT400046398	Potato	nucleus	14.21	27.68
CDX98073	Canola	cytosol	13.68	26.83
Bra019757.1-P	Field mustard	cytosol	13.68	26.83
Bra015682.1-P	Field mustard	nucleus	22.56	25.66
CDX88353	Canola	nucleus	21.85	25.52
CDX87531	Canola	nucleus	22.38	25.45
Bra003689.1-P	Field mustard	nucleus	20.07	24.46
CDX68064	Canola	nucleus	20.07	24.46
Solyc04g058190.2.1	Tomato	nucleus	25.04	23.38
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	20.6	23.29
AT1G77250.1	Thale cress	nucleus	21.31	22.99
VIT_18s0001g01580.t01	Wine grape	nucleus	24.33	21.89
KRH53317	Soybean	nucleus	23.45	20.43
KRH18055	Soybean	nucleus	23.45	16.44
KRH16456	Soybean	nucleus	23.27	16.31
TraesCS3D01G202300.1	Wheat	nucleus, plasma membrane	26.29	13.65
TraesCS5D01G556000.1	Wheat	cytosol, extracellular, nucleus	2.13	7.23
TraesCS6D01G159400.1	Wheat	nucleus	15.99	4.3
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	5.68	3.9
TraesCS5D01G556100.1	Wheat	nucleus	1.6	3.19

Protein Annotations

Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791
GO:GO:0048586	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628	PFscan:PS50016	PANTHER:PTHR10615
PANTHER:PTHR10615:SF123	SMART:SM00249	SUPFAM:SSF57903	EnsemblPlantsGene:TraesCS7D01G321100	EnsemblPlants:TraesCS7D01G321100.1	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr7D:+:411302034..411305035

Molecular Weight (calculated)

61740.2 Da

IEP (calculated)

7.221

GRAVY (calculated)

-0.520

Length

563 amino acids

Sequence
(BLAST)

001: MTSQDGAAPL PAPPKRPAPG EQPSSEVLVT YKRRRTATRG ASSDPGAPCA TIVPCSGTSG QDGHQILPRH WITWRNTLEG FLQSPGVNKG GGIQSCIQDA
101: LRYNCCRSVQ KGNLNKGQEA SEEHPAGVAG AKEISSCIAL KDAIAASLDA NTAMCNNALL DIFVSEKFAM LCDLLVGTFH VSKVHEVIDL GKIDANMRNG
201: NYARNPALFN DHIQQIWEKF EQVGREMTSL ASNLPIISRA SYQKQASGVS EVEVAAEHRI EETSLGGFVE KIPKDSNTTT QFSPCDSGHS TIPKRSGTCG
301: LGRTCTCKQC GTSAEEEKSL ICDGCDTTYH FECVKRLHPA MKQIPDNWHC PACSSNKGKG KGKAAGTKKN VLDSLHGDCP LCDKLEVIKK IEPPEVASGI
401: EVADEREGSS VPSVEEENEP DLYTTALSKL CKHCGTCEDD DKQFLVCGHP YCPYKFYHIR CLRTSQIALE KQKNLECWYC PSCLCRGCFK NKDDEEITLC
501: DGCDEAYHVY CMTPKRTCVP KGHWYCPLCS VRRAREGMQR YEKSILKKQQ HISAKRASQA DDA

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.