CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18055	Soybean	nucleus	80.45	80.45
KRH53317	Soybean	nucleus	40.47	50.31
PGSC0003DMT400046398	Potato	nucleus	16.81	46.71
Bra019757.1-P	Field mustard	cytosol	14.07	39.37
CDX98073	Canola	cytosol	14.07	39.37
VIT_18s0001g01580.t01	Wine grape	nucleus	30.14	38.66
Solyc04g058190.2.1	Tomato	nucleus	27.4	36.48
CDX88353	Canola	nucleus	21.3	35.48
CDX87531	Canola	nucleus	21.42	34.75
Bra015682.1-P	Field mustard	nucleus	21.3	34.55
Bra003689.1-P	Field mustard	nucleus	19.55	33.98
CDX68064	Canola	nucleus	19.55	33.98
AT1G77250.1	Thale cress	nucleus	21.54	33.14
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	19.68	31.73
EES01867	Sorghum	nucleus	6.72	31.03
GSMUA_Achr5P01220_001	Banana	nucleus	21.05	30.95
Zm00001d042613_P001	Maize	cytosol	6.48	28.57
GSMUA_Achr11P...	Banana	nucleus	20.92	28.47
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	13.2	27.04
Zm00001d035008_P001	Maize	nucleus, plastid	17.06	24.68
Os08t0105000-01	Rice	nucleus	17.19	24.51
Zm00001d049736_P001	Maize	nucleus, plastid	16.94	24.37
TraesCS7B01G225200.1	Wheat	nucleus, plastid	16.56	23.71
TraesCS7D01G321100.1	Wheat	nucleus, plastid	16.31	23.27
KXG24174	Sorghum	nucleus	15.94	23.23
TraesCS7A01G324700.2	Wheat	nucleus, plastid	16.31	23.19
Os01t0883400-00	Rice	extracellular	6.35	23.08
HORVU7Hr1G077650.5	Barley	nucleus, plastid	16.06	22.95
TraesCS3D01G202300.1	Wheat	nucleus, plasma membrane	18.43	13.65
TraesCS3B01G231800.2	Wheat	nucleus	18.18	13.49
Zm00001d011158_P001	Maize	nucleus	18.18	12.34
KXG32724	Sorghum	nucleus	17.68	11.83
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	5.6	5.49
Os01t0547200-01	Rice	nucleus	5.6	5.06
KRG93338	Soybean	nucleus	12.2	4.51
KRH20317	Soybean	nucleus	11.96	4.36

Protein Annotations

EntrezGene:100810450	Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A0R0GMI8	EMBL:ACUP02008891
EnsemblPlantsGene:GLYMA_14G156600	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787
EnsemblPlants:KRH16456	ProteinID:KRH16456	ProteinID:KRH16456.1	PFAM:PF00628	ScanProsite:PS01359	PFscan:PS50016
PANTHER:PTHR10615	PANTHER:PTHR10615:SF158	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI0003DEBDA4	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr14:+:34291536..34311603

Molecular Weight (calculated)

87271.7 Da

IEP (calculated)

4.783

GRAVY (calculated)

-0.549

Length

803 amino acids

Sequence
(BLAST)

001: MEAEDGSSNG DNGEGVGLDR RLGSEDGDNG GRILGGSGVA EGEEDRGLKD RAVSYGVAIG GEEVQDLKKE AVDNGVAVEG GDGLAEGEEV QDLKNETVNN
101: GMETEGGNGV AEGEVWTLKN GVINSGVAIA DGSAAAEDGE VSGSKNEVNG VAFADGNGVT EHGEVWGSKN EAVNNEVAIV DGNGVAYSGE VHGSKNGAVN
201: NEVVIADGNG VTEGQEDHCL KNETVNNVVA NADEGNSGAV ECFQTYKRRK HAKSSSEFKV QENSRKHMGA ASQLLVQAVK KPFDLAVGNT SKDHSHDHWG
301: NVVLKHLYHS LGNDNGGMKW CIREALMSCP KISCAPTMKE TLKIVKDGQE CSPQLESLFY RLQSEANGHE NVVHNGFSSE SNGRDTTEGC QRVFRDILAS
401: EKFSSLCKVL LENFQGTKPE TVFDFSLINS RMKGQAYEQS PTLFLSDVQQ VWRKLQSTGN QIVAMARSLS NMSKASFCEQ VGISAQSSFE DEKEVLCNQE
501: SISHMKPEQT VECVAFRLGT CWHCGDKADG TDCLVCDSCE EMYHLSCIEP AVKEIPYKSW FCANCTANGI GCRHKNCVVC ERLNALKTLD DIVGEENIPT
601: NEETLNELEE NSNCTYDGIQ ISTDRRNSSD CKICKMAVDG EKVKICGHSF CPSKYYHVSC LSSKQLKSYG HCWYCPSCIC QVCLTDKDDN KIVLCDACDH
701: AYHVYCMKPP QNSIPKGKWF CIKCEAGIQA IRQARKAYES NKGKVGQNDS KPNEDIDKKW NKKRGRELDN VGGMMDMLIT AANTLNSEED LNAMLIDSKK
801: ALT

Best Arabidopsis Sequence Match ( AT3G08020.1 )
(BLAST)

001: MAFHVACPIT CRRICHCSLG FSRDLRGANA KHKFLKEVIR VEEFLKDPAV SSNVFIGGTV QVRVPKVVPA PQTVSILGVG DGAIGSGVDE LAEEASAQKK
101: RVALQRQAAV TVEAAEDYAR RFESGVNDLT SNDHAGEELG HSGMNIMCRM CFLGEGEGSD RARRMLSCKD CGKKYHKNCL KSWAQHRDLF HWSSWSCPSC
201: RVCEVCRRTG DPNKFMFCKR CDAAYHCYCQ HPPHKNVSSG PYLCPKHTRC HSCDSTVPGN GLSVRWFLSY TCCDACGRLF VKGNYCPVCL KVYRDSESTP
301: MVCCDICQRW VHCHCDGISD DKYMQFQVDG KLQYKCATCR GECYQVKDLQ DAVQELWKKK DVVDKELIAS LRAAAGLPTE EEIFSIFPFS DDEENGPVSG
401: RSLKFSIKGL VEKSPKKSKE YGKHSSSKKH ASKKGSHTKL EPEVHQEIGS ERRRLGGVRI DNVGFQINEQ SDVNSSVAGI CSTHEPKIVK HKRVDDVMVT
501: DEEKPSRIVR IKCSKPHDSD SEDTLRNAGE EKSVKAKKLV INLGARKINV SGSSKSNVVS HLSRDKDQST LGGDKVDQTG EVRTLKISGR FGKTQSEGSK
601: ATFGSVTQFP AASTSEGNHV DDKTSISPAL QKEARPLLKF KLRKPNSGDQ TSSVTTQSED EKLSSAKGQR SKRKRPSSLV DMASLKEDGE ATTHSHQDNS
701: RNDEMMDANW ILKKLGKDSI GKRVEVHGSQ NSWRKGTVTD VSGDTSTLSV SLDDGSIKTF ELGKHSVRFI PQKQKRSRS

Arabidopsis Description

PHD finger family protein [Source:UniProtKB/TrEMBL;Acc:Q0WKW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.