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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG93338 Soybean nucleus 89.46 90.57
VIT_13s0047g00420.t01 Wine grape cytosol 2.77 63.54
HORVU5Hr1G123360.1 Barley cytosol, nucleus 2.91 53.78
VIT_13s0101g00020.t01 Wine grape cytosol 2.77 50.0
VIT_14s0066g01450.t01 Wine grape nucleus 47.09 49.5
AT3G01460.1 Thale cress nucleus 43.19 43.7
CDY49055 Canola nucleus 42.37 43.66
Bra040518.1-P Field mustard nucleus 42.37 43.54
CDY37520 Canola nucleus 42.23 43.4
CDY28674 Canola nucleus 42.51 42.74
Bra039117.1-P Field mustard nucleus 39.24 42.44
TraesCS3A01G530300.1 Wheat cytosol, extracellular, mitochondrion, nucleus 3.04 40.12
TraesCS5D01G556000.1 Wheat cytosol, extracellular, nucleus 2.95 39.16
HORVU5Hr1G123350.3 Barley cytosol 15.49 38.44
TraesCS4A01G324900.1 Wheat cytosol, mitochondrion, nucleus, vacuole 27.29 36.76
GSMUA_Achr3P12190_001 Banana nucleus 34.33 36.26
Os02t0192400-01 Rice nucleus 14.99 34.92
TraesCS6D01G159400.1 Wheat nucleus 32.7 34.43
TraesCS6B01G197500.1 Wheat nucleus 32.52 34.29
HORVU6Hr1G034680.3 Barley nucleus 32.56 34.24
TraesCS6A01G169600.1 Wheat nucleus 32.33 34.03
EES04674 Sorghum nucleus 32.43 33.77
Solyc05g005640.2.1 Tomato nucleus 30.11 33.12
Zm00001d053697_P007 Maize nucleus 32.02 32.84
TraesCS4A01G325100.1 Wheat plastid 4.09 31.58
TraesCS5B01G537600.1 Wheat mitochondrion, plastid 4.22 31.21
TraesCS5B01G570700.1 Wheat mitochondrion 4.04 29.67
HORVU5Hr1G123390.2 Barley nucleus 19.94 28.56
TraesCS5D01G556100.1 Wheat nucleus 3.5 27.3
KRH53317 Soybean nucleus 3.86 13.16
KRH18055 Soybean nucleus 4.59 12.58
KRH16456 Soybean nucleus 4.36 11.96
Protein Annotations
Gene3D:1.20.920.10EntrezGene:100820223Gene3D:3.30.40.10MapMan:35.1EMBL:ACUP02008253InterPro:Bromodomain
InterPro:Bromodomain-like_sfInterPro:DNA-bd_dom_sfInterPro:FYrich_NEnsemblPlantsGene:GLYMA_13G170000GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005720GO:GO:0006139GO:GO:0006259GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0010216GO:GO:0016043
GO:GO:0016567GO:GO:0016740GO:GO:0019538GO:GO:0040029GO:GO:0046872GO:GO:0061630
GO:GO:0090308UniProt:I1M022InterPro:IPR001487InterPro:IPR001739InterPro:IPR003888InterPro:IPR013083
InterPro:IPR019787InterPro:IPR036427EnsemblPlants:KRH20317ProteinID:KRH20317ProteinID:KRH20317.1InterPro:Methyl_CpG_DNA-bd
PFAM:PF00439PFAM:PF00628PFAM:PF01429PFAM:PF15612ScanProsite:PS01359PFscan:PS50014
PFscan:PS50016PFscan:PS50982PFscan:PS51542PANTHER:PTHR14140PANTHER:PTHR14140:SF29SMART:SM00249
SUPFAM:SSF47370SUPFAM:SSF54171SUPFAM:SSF57903UniParc:UPI0002957696InterPro:WHIM1_domInterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-fingerInterPro:Znf_RING/FYVE/PHDSEG:seg:
Description
hypothetical protein
Coordinates
chr13:-:28402558..28415978
Molecular Weight (calculated)
242139.0 Da
IEP (calculated)
5.249
GRAVY (calculated)
-0.415
Length
2202 amino acids
Sequence
(BLAST)
0001: MIMELSDSTG GDRNLNAPPP LPPPHNNHNQ DARSGLGIDL NEIPSPSSSF PETLPGSVTV DVVRSYHDNP APPPGGPAAL PRSGSSPCAA CAKPSPAAGS
0101: HHQLVVCDGC ERGFHLACAG IRGGGRQAAS LDEWVCGECV AAGVKSKRWP LGVKQLLDIN APPPSDAEGD GGDDEVQVSR KHALGDNSFA ANPFGALVTN
0201: SNFNNGNANG FEKASEVVTH AVRVGFEDIL NHTQSITRSF EEALRDFVSE RRGVLEEGWR VEFRQSVSNS ELYAVYCAPD GKIFDSVYEV ACYLGLTSGY
0301: NSIESELRSE RSLPSLGGPP SRKRKSTRTT VANGSMENRG TSTNSNCKDP PCDGLNVECA SARGNIPKPS EIGRKEDCHS CSQQSADGLP LQFKDFFVLS
0401: LGKVDGRPSY YDVNLIYPVG YKSCWHDKIT GSLFTCEVLE GGDSGPIFRI RRCSCSEFPV PVGSTILSMS KLCQVVSQTN EGERKTNANM DLDYDEGLQM
0501: MLLDSCLPTE NDILSCFPSC SIESRDMSDV LHPITSSVQD NASNSLADNL GFNGLGEILV EERSSFSAWR VISQKLVNAC KDILKLKGTL KFYCNHVDKW
0601: DLRNGKSDTY CTSLDKFCGS LGSVGIPDVI YSDNDLEGIY VALGKWLEQD RFGLDVEFVQ EVLEQLPSVQ DSLQYELLNN RNNSSSLPTV ENGFLVVEWR
0701: DGSKYQEEAV QALYGRSKKV TEKSIKESCH PPLGKPLCSR APGELIGDIF QAWELLKRFH EILDLKEPLT LDELEKELIN PWFDGSNFLE KSERDMDESQ
0801: VFISLGADGN GRPLLSPRCE VDPSVSIESS HAFIHVETEA MKETAQVKLA SFTYARCFGV ALTKAHKSLL RVLIGELLSK VAALVDPNSE PGESRTRRGR
0901: RKDMDSAVPA KRTKLNMLPI NELTWPELAR RYMLAFLSMD GNLESAEITA RESAKVFRCL RGDGGLLCGS LTGVAGMEAD AQLLAEATKT IFGSLSREND
1001: ILTMEEEESN AKGAPEIFLA NDGNVPEWAQ MLEPVRKLPT NVGTRIRKCV YEALEKNPPE WAREILEHSI SKEVYKGNAS GPTKKAVLSV LVKVGGEGLQ
1101: SNPNKSQKKK IVISISDIIM KQCRIVLRRA AAADDSKVFC NLLGRKLINS SDNDDEGLLG SPAMVARPLD FRTIDLRLAT GAYGGSHEAF LEDVRELWNN
1201: VRVAFGDQPD LVELAEKLTQ NFESLYNEEV VTYVQRFVEY AKLECLSAEM RKEVGDFIES TNEIPKAPWD EGVCKVCGID RDDDSVLLCD TCDAEYHTYC
1301: LNPPLARIPE GNWYCPSCVV GKHATQNVTE RTQVIGKRQS KKFQGEVNSL YLESLAHLSA AIEEKEYWEY SVGERTFLLK FLCDELLNSS LIHQHLEQCA
1401: ELSAELHQKL RAHSAEWKSL KTREDILSTK AAKIDTFSLN TAGEVGLKEG FASLLSNTGK CLVQPHTAVD NPSNFGVFVD SLPSEEVTKD KYRFDSVDKS
1501: ISVTNSDSDS QNMNSIDVEG QFRNVSGAVE SQCTDKSPKS FPLPNHMPQE TNGAGGASLV QGKNQKCEGK DIPTPVSYQQ GMPVDVPQIS VNESEPYHLE
1601: LIAIKRDISL LQDSITSVAS QLLKLSVRRE CLGIDSIGRL YWASALPGGR SRIVVDASAA LLHGRGMTFS RDYVEKFSVL QHCALSDKDS SLMSQPSNPL
1701: GNSSPWIAYE TDVEIEELLG WLDDSDPKER ELKDSIMLGP KSRFQQFINA QTEDRAKDQG NVSMPRNREK TVSNSLVTKA TSLLEKKFGP FVEWDNSEVL
1801: KKQNRKTRTT NDEKLYRCEC LEPILPSRKH CTHCHKTVAS DIEFDGHNDG KCNAGLLAIE KNKDKNGSSK GRGNLKCDTL HEKFRADAET ALTSVSGSSK
1901: LSSRLIKFSN EESTCPFNFE DICSKFVTND SNKELVSEIG LIGSDGIPSF VPSVSPFVSE YTLSAQKDES IVGGVSIVSE SRVSQGNTDG AGTCLDHKSG
2001: ISTGKLAANE SNKSNKSSLR EQRDGKFSFC SPASVMGADG CCVVPSPSLR PLVGKASHIL RQLKINLLDM DAALLAIALR PSKAVPDRRQ AWRTFVKSAK
2101: TIYEMIQATF TLEDMIKTEY LRNDWWYWSS FSAAAKSSTL PSLALRIYSL DLAIIYEKMP NSSFTDSSEP SVIAEPKPLM NVDTEKSKAS RKSTRKRKES
2201: DS
Best Arabidopsis Sequence Match ( AT3G01460.1 )
(BLAST)
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.