Factsheet for TraesCS5B01G537600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01460.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT3G01460.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT3G01460.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G570700.1	Wheat	mitochondrion	84.56	84.0
HORVU5Hr1G123360.1	Barley	cytosol, nucleus	31.54	78.99
TraesCS4A01G325100.1	Wheat	plastid	69.13	72.28
VIT_13s0047g00420.t01	Wine grape	cytosol	17.11	53.12
VIT_13s0101g00020.t01	Wine grape	cytosol	17.79	43.44
Os02t0192400-01	Rice	nucleus	39.26	12.38
TraesCS6B01G197500.1	Wheat	nucleus	48.32	6.9
Zm00001d053697_P007	Maize	nucleus	40.27	5.59
EES04674	Sorghum	nucleus	38.59	5.44
TraesCS7B01G225200.1	Wheat	nucleus, plastid	9.73	5.17
Solyc05g005640.2.1	Tomato	nucleus	32.55	4.85
GSMUA_Achr3P12190_001	Banana	nucleus	33.89	4.84
VIT_14s0066g01450.t01	Wine grape	nucleus	30.87	4.39
VIT_01s0026g00150.t01	Wine grape	nucleus	28.52	4.25
KRH20317	Soybean	nucleus	31.21	4.22
KRG93338	Soybean	nucleus	30.54	4.18
Bra040518.1-P	Field mustard	nucleus	28.86	4.01
AT3G01460.1	Thale cress	nucleus	28.86	3.95
CDY49055	Canola	nucleus	28.19	3.93
CDY28674	Canola	nucleus	28.86	3.93
Bra039117.1-P	Field mustard	nucleus	26.51	3.88
CDY37520	Canola	nucleus	27.85	3.87
TraesCS5B01G538100.1	Wheat	nucleus	5.7	1.92
TraesCS3B01G231800.2	Wheat	nucleus	6.38	1.76

Protein Annotations

EnsemblPlants:TraesCS5B01G537600.1

EnsemblPlantsGene:TraesCS5B01G537600

PANTHER:PTHR14140

PANTHER:PTHR14140:SF29

SEG:seg

MapMan:35.1

Description

No Description!

Coordinates

chr5B:+:693450179..693451510

Molecular Weight (calculated)

32266.5 Da

IEP (calculated)

9.483

GRAVY (calculated)

-0.291

Length

298 amino acids

Sequence
(BLAST)

001: MPIIAPVANN GGPRRSLTWF VGGGAPISAA PWSSGVAEEP TPVVWPRRAG AGHHYLRRLR TWVPRILRPR LWSTYAPAST TTAAQPCAGA AASGSGDQGL
101: DGQEGSNFVQ NCDAGSMGDE IVSKSKEPTP DTDTTSCEEA SSSTAVKPTR LLAVNGGLVP ESSLRPVTGR NSHILKQQKI NLLDIDAALP EEALRASKSQ
201: QIRRHSRRAF VKRAESISEM VVATSVLESM IKSEFLKNDC WYWSSFTVAM KTSTVSMLAL RIYTLDDCIM YTKEPNIVLA TKVLNKGRTR IEPEPSVS

Best Arabidopsis Sequence Match ( AT2G34090.3 )
(BLAST)

001: MHSHCEKRKI QRLGKSTKTK RVVVRCFIIL CFSSVMAEIC YFGGLVHYKS PSLPLSLHSL FRSKKPHYYN STSLMAECLS SSTVEPPSLL VFSGGTGFNG
101: VVEELKKLTT RVAHVLPVSD DGGSTAEIVR VLGGPAVGDI RSRCLRLSDE STSEALAVRR LLGHRLPIDA HQAKKDCWNF DRYDIVEGNH SLWDGVSRPY
201: SETIRAFLIY FQNEIHRRPN ERFCFSNGSI GNFFFAGARI FFQSLDAAIF LFSRVSEIPC DSLVLPVIST NDRLTLGCEL QDGTIIRGQN EISHPTTGTT
301: QTVDKRHCST SALPSKIKRV FYMSSEGNNL LHEVFPPVNP TVLEQLRSVD CIVYAMGSLF TSICPSLVLL GVGEIISSRS CRKVLLLNGS QDRETSRFTA
401: SCFVTAIADA LNRTHGDTNI RLKNPPGYYI NTLLVPKDGE IAVDLKQLSE QGIYDVRVVE SVGDPKHGIL FNPSSLINTL AGLVE

Arabidopsis Description

MEE18maternal effect embryo arrest 18 [Source:TAIR;Acc:AT2G34090]
SUBAcon: [mitochondrion,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.