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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra010432.1-P
Bra026415.1-P

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY28674 Canola nucleus 98.97 96.85
Bra039117.1-P Field mustard nucleus 77.51 81.58
AT3G01460.1 Thale cress nucleus 82.41 81.16
VIT_13s0047g00420.t01 Wine grape cytosol 2.8 62.5
HORVU5Hr1G123360.1 Barley cytosol, nucleus 3.08 55.46
VIT_13s0101g00020.t01 Wine grape cytosol 2.85 50.0
KRG93338 Soybean nucleus 43.16 42.53
VIT_14s0066g01450.t01 Wine grape nucleus 41.53 42.48
KRH20317 Soybean nucleus 43.54 42.37
HORVU5Hr1G123350.3 Barley cytosol 14.98 36.19
TraesCS5D01G556000.1 Wheat cytosol, extracellular, nucleus 2.75 35.54
TraesCS3A01G530300.1 Wheat cytosol, extracellular, mitochondrion, nucleus 2.75 35.33
TraesCS4A01G324900.1 Wheat cytosol, mitochondrion, nucleus, vacuole 25.9 33.95
GSMUA_Achr3P12190_001 Banana nucleus 32.8 33.72
EES04674 Sorghum nucleus 31.96 32.4
TraesCS6A01G169600.1 Wheat nucleus 31.22 31.98
Solyc05g005640.2.1 Tomato nucleus 29.82 31.92
TraesCS6D01G159400.1 Wheat nucleus 31.08 31.85
TraesCS6B01G197500.1 Wheat nucleus 30.98 31.8
HORVU6Hr1G034680.3 Barley nucleus 30.94 31.66
Os02t0192400-01 Rice nucleus 13.86 31.43
Zm00001d053697_P007 Maize nucleus 31.31 31.25
TraesCS4A01G325100.1 Wheat plastid 3.97 29.82
TraesCS5B01G537600.1 Wheat mitochondrion, plastid 4.01 28.86
TraesCS5B01G570700.1 Wheat mitochondrion 3.83 27.33
HORVU5Hr1G123390.2 Barley nucleus 18.62 25.96
TraesCS5D01G556100.1 Wheat nucleus 3.36 25.53
Bra003689.1-P Field mustard nucleus 3.59 16.67
Bra019757.1-P Field mustard cytosol 2.1 15.68
Bra015682.1-P Field mustard nucleus 3.22 13.94
Protein Annotations
Gene3D:1.20.920.10Gene3D:3.30.160.360Gene3D:3.30.40.10MapMan:35.1EnsemblPlantsGene:Bra040518EnsemblPlants:Bra040518.1
EnsemblPlants:Bra040518.1-PInterPro:Bromodomain-like_sfncoils:CoilInterPro:DNA-bd_dom_sfInterPro:FYrich_CInterPro:FYrich_N
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0046872InterPro:IPR001739InterPro:IPR003888
InterPro:IPR003889InterPro:IPR013083InterPro:IPR019787InterPro:IPR036427UniProt:M4FHE0InterPro:Methyl_CpG_DNA-bd
PFAM:PF00628PFAM:PF01429PFAM:PF05964PFAM:PF15612PFAM:PF15613ScanProsite:PS01359
PFscan:PS50016PFscan:PS50982PFscan:PS51542PFscan:PS51543PANTHER:PTHR14140PANTHER:PTHR14140:SF29
SMART:SM00249SUPFAM:SSF54171SUPFAM:SSF57903UniParc:UPI000254508AInterPro:WHIM1_domInterPro:WHIM2_dom
InterPro:Zinc_finger_PHD-type_CSInterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-fingerInterPro:Znf_RING/FYVE/PHDSEG:seg
Description
AT3G01460 (E=0.0) MBD9, ATMBD9 | MBD9; DNA binding / methyl-CpG binding
Coordinates
chrA01:-:28534212..28542655
Molecular Weight (calculated)
237565.0 Da
IEP (calculated)
5.304
GRAVY (calculated)
-0.464
Length
2143 amino acids
Sequence
(BLAST)
0001: MELTDSTKKQ LGETRSAALD EDNRSFLGID LNEIPTGVTP GGAVQDDDGE YEPVEVVRSI HDNPDPAPGA PAEVPEPDRD AACGACGRPE SMELVVVCDA
0101: CERGFHLNCV NDGVEAAPSA DWMCSDCVAG GGRSKLWPLG VKSKLILDMN ASPPSDAEGY GGEDTSDSRK HMLAMGNSFE HSMTHSSFLD PGRAHTLDFG
0201: FPSNLGNSSL PIRFPSLDPS ELLLHNLRHF ISERHGVLED GWHVEFKQPL NGYHLCPVYC SPSGKTFSSI QDVACYLGLA TNGNYSCMDT DIRNESSLLQ
0301: ERLNMPKRRK TSRWPNNSFP DLKGSSVSAQ LSRFPYNGQT MPPFAISSGE SLSSGNNGCG CEEANKGLPM QFEDFFVLSL GRIDIRQSYH NVNMIYPIGY
0401: KSCWHDKITG SLFTCEVSGG SSGPVFKITR SPCSKSFVPV GSTVFSCPKI DEMVEQNIDK RGDRRDSIQE HDDDTVEILL SDPSPPLGDD ILSCLQEKSF
0501: SSTFYCLRSE VGSSQVDLNN TLSYNQQHEV EIGDIIVEED SLSVAWQKVS QKLVDACSNV LKHKGTMNFR CKHVDRETRE INWDTRNEKD NVILSLSRFC
0601: CSLAPHSATC GGKDNSEIAS LVDVLSRWLD QSRFGLDADF VQEMIERMPG AESCSNYRSL KTRSSSVSVT VAEGALIANP KVGENVREEV FGEISRKAKR
0701: HKLNGGHGFS NPHPPPGRPM CLRLPPVVVG DFLQVSEVFW RFREILGLGE AFSPEKLEQE IVNPVFDGLF LDKSGKEVNR SEMNISDEDR TATKFLSLLD
0801: ESRQPFSSEN TFASVLKETK AGDSTEFNIS NSSRGPCVGA LLTKTHISLL QVLICELQSK VAAFVDPNFD SGESRSRRGR KKDDCTLSAK RNKLHMLPVN
0901: EFTWPELARR YILSLLSMDG NLESAEIAAR ESGKVFRCLQ GDGGLLCGSL TGVDGMEADS MLLAEAIKKI FGSLTRENDV LSVEDDDSDG LDATETNACN
1001: GDIPEWALVL EPVRKLPTNV GTRIRKCVYD ALERNPPEWA KKILEHSISK EVYKGNASGP TKVQSLKPML FPPEKAVLSL LADVRGGDLV QKSVKGTKKR
1101: TSIGVSDVIM KKCRAVLRDV AAVDEDKVFC TLLGRKLLNL NDNDDDGLLG SPAMVSRPLD FRTIDLRLAV GAYDGSTEAF LEDILELWSC IRVMYADQPD
1201: SLELVEKLSK KFKSLYEAEV LPLAQKLMDY RKLECLSAEM RKEIKDIVVS VNKLPKAPWD EGVCKICGVD KDDDSVLLCD TCDAEYHTYC LNPPLIRIPD
1301: GNWYCPSCVI AKRMAQDALE SNKLVRRRKR RKYQGELTRA SMETAARLVD VMGEKDYWEF SAEERILVLK LLCDELLSSS LVHQHLEQCA EALIEMQQKL
1401: RSLSSEWKNT KLRQEFLTAK LAKVEPSILK EMGEPQNSSS FADHHGRHQQ QENVGEKVPH DDGTSSAAFL TNNQGKAPIE THAQTGGSNV ISSENKIHTP
1501: EKVTSPGRNE LPIEVTDHMS CEIEDTTETL DKSVGKNRET HSIKPNAAEL KTAHDASSLA SQELQACRQD LNATSNEIQN LQQSIRSIES QILRQSIRRD
1601: FLGSDGSGRL YWGCYFAEEH PRILVDGSMS LQKAVQVDLT GSKVPSPFLH AVDHGRLMVS PWTYYETEAE ISELVLWLHD DDPKERELRE SIMCWKRIRF
1701: GDLQREIKQA ENSSSPIMAG DLVTKAAMAM EKRYGPCIKL EIETYKKRGK KTKCAEREKL CRCECLESIL PSMIHCLICH KTFASDDEFE EHAESKCVPY
1801: SLATEEGKEK SDSSKAKESL KSDYLSVKSS AGKDKAEISN VSELGSGLIR YQEEESISPY HFEEICSKFV TKDSNRDLVK EIGLIGSNGS PTFLPLPSIH
1901: LNDSMLISAT CNKLDGGDSG DQVIFTGSEA NGEGLNSESL DRSVTNDLGN PLNKLSGMGC DKSEEKNKKS TGSGLKGCCV VPQASLKRVT GKALPVFRFL
2001: KTNLLDMDVA LPEEALRTSK SHPDRRRAWR AFVKSAQSIF ELVQAAIVVE DMIKTEYLKN EWWYWSSLSA AAKISTLSAL SLHIFSLDAA IMYDKTITQS
2101: DPMDATKEIG LQEQKSQPVT DPQERSSRAN RRSGKKRKEP EGA
Best Arabidopsis Sequence Match ( AT3G01460.1 )
(BLAST)
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.