Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G035250.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G01460.1 | HORVU4Hr1G035250.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G123350.3 | Barley | cytosol | 50.42 | 87.37 |
| TraesCS5D01G556100.1 | Wheat | nucleus | 14.51 | 79.08 |
| TraesCS5D01G556000.1 | Wheat | cytosol, extracellular, nucleus | 7.09 | 65.66 |
| TraesCS3A01G530300.1 | Wheat | cytosol, extracellular, mitochondrion, nucleus | 6.7 | 61.68 |
| HORVU6Hr1G034680.3 | Barley | nucleus | 58.49 | 42.93 |
| EES04674 | Sorghum | nucleus | 44.31 | 32.21 |
| Zm00001d053697_P007 | Maize | nucleus | 44.76 | 32.04 |
| GSMUA_Achr3P12190_001 | Banana | nucleus | 29.28 | 21.58 |
| VIT_01s0026g00150.t01 | Wine grape | nucleus | 27.13 | 20.87 |
| VIT_14s0066g01450.t01 | Wine grape | nucleus | 28.43 | 20.86 |
| KRG93338 | Soybean | nucleus | 28.95 | 20.46 |
| KRH20317 | Soybean | nucleus | 28.56 | 19.94 |
| CDY49055 | Canola | nucleus | 26.29 | 18.91 |
| CDY37520 | Canola | nucleus | 26.15 | 18.76 |
| Bra040518.1-P | Field mustard | nucleus | 25.96 | 18.62 |
| Solyc05g005640.2.1 | Tomato | nucleus | 24.2 | 18.58 |
| AT3G01460.1 | Thale cress | nucleus | 26.15 | 18.47 |
| CDY28674 | Canola | nucleus | 25.89 | 18.17 |
| Bra039117.1-P | Field mustard | nucleus | 22.97 | 17.34 |
| Os02t0192400-01 | Rice | nucleus | 6.44 | 10.48 |
| HORVU7Hr1G077650.5 | Barley | nucleus, plastid | 3.77 | 10.32 |
| HORVU5Hr1G123360.1 | Barley | cytosol, nucleus | 0.46 | 5.88 |
| VIT_13s0047g00420.t01 | Wine grape | cytosol | 0.26 | 4.17 |
| VIT_13s0101g00020.t01 | Wine grape | cytosol | 0.33 | 4.1 |
Protein Annotations
| Gene3D:1.20.920.10 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A287T0T7 | InterPro:Bromodomain-like_sf | ncoils:Coil |
| InterPro:FYrich_C | InterPro:FYrich_N | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:HORVU5Hr1G123390 | EnsemblPlants:HORVU5Hr1G123390.2 |
| InterPro:IPR003888 | InterPro:IPR003889 | InterPro:IPR013083 | InterPro:IPR019787 | InterPro:IPR036427 | PFAM:PF00628 |
| PRINTS:PR01217 | ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS51542 | PFscan:PS51543 | PANTHER:PTHR14140 |
| PANTHER:PTHR14140:SF29 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000B4740E1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr5H:+:663921077..663937117
Molecular Weight (calculated)
169338.0 Da
IEP (calculated)
5.969
GRAVY (calculated)
-0.388
Length
1537 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDRPPHLDID LNKTPSPSPS PPPSPPREIA APVVAPPPQL PPPANVQAQQ QLAHQAREIA LAYQRGEWWR SACAAAIAGS SLEVPPPSVL QSPTFALPPL
0101: PPSSVLQSPT FVLPPLPPPA ILQSPTFAPP SVPSPVLQSP TFAPPPLPPP VLQSPTFAPL SLPPPPVLQS STFAPPSLPP PPVLQWPTVA PPPLRPSPQI
0201: PPPANVLQAQ LQHANQAREL VLAYHRGEWC RSAIAATAAT AGSSVEVPPR APAQHPGAAG WGGNPCASCG LPELPAATII CDACERGFHE SCVNVRCPPP
0301: PVPTPGVRVR RPEVAVNEDW LCPECEIAGA RRAVPLHTNE DPVAVTIQEI TRQVSVADGA HSTELATPHF EGLQLNSTTP FDVNHCMPAF DHPHCFSMRQ
0401: QFPHVGQNAI ADGNTEQRSN HSCHKRRDSP QISALPKLSE KNEFGSSSTF MQPSLSTKAP APSPTEKTNP PKPPKFLAET CNRQPHHGSV SLPVQYQDFF
0501: ITNLGEIDKN ASYHNCQQIW PVGFTSYWHD RVTGSLFECE VCDGGSSGPL FKVRRLPCSV FPLPVASTIL SQNGARKADT TKTKESSSFI GDAANDMEDN
0601: LYMMMDIPSE TNQDFLSCLA NDTEDKRTSL DCNDVQSPNM MSQILPSNSE NVPPTKEANF NDQIGEFTFE GTSSSSVWGV ISFAMVEACE KMYKEHGHLV
0701: FSCTHSCENH LLNRGSGCQK FDGPYAPLTR FCSSNGPSIP RITEKKNDVE STYTLLKKWL YHDRIGLDLD FVQEIVESLP RSMSCINYQF LCNRTEFLSS
0801: VTVANGLLLS VHKDGQSNGD TSCGRQGAVT GVHDHGQPSG SIIRELPPGR PISRKLQPES AADVFKIWEF LGRFAEIIHL KEVPSYEELE DELADPWPTC
0901: ASQKESLSKG IEQCRDYSSP MNSPANASIS HLNTESGLSN NEEIVSVFIP VETSSMKEAG LDKLAAQTLG RCTGTVLPGV HLTLIKVLFG ELLSKLNIDQ
1001: KEPKPKRGRK KDTEILISTK EFSVDMLTAN RLTWPELARR YMLAISSING FMDVSNISCR EVVKLFRCLQ GDGGIMCGAV PGVAGMEKDA QLLLEAENLI
1101: CSSLPSDGNK VFMMDYKYSS EVHIADNRTL PDWAEQLEPV RKLPTNVGTR IRKCVYEALD RKPPEWARKI LEHSVSKEVY KANACGPTKK AVLSVLSEAC
1201: RVIVPQKPEN PRNERKTISI LEVILKKCRI ALRQAISADE YKLLGNLLGT MPVNFNEYED QAILGFSGMM PRPLDFRIID IRLAMGAYCG SWETFSEDVQ
1301: EVIRNMQIIF ADQADVLQMV EEFSKTFESM YKTEVLDLVQ KFDCYLSSEN TGSEIQEELH DILTAATKLP KAPWEYGICK VCGIDRDDDN VLLCDDCDSE
1401: YHTYCLKPPL ARIPKGDWFC PSCMLKKSHL DQGAQDLKQR RKGAESHAFN DKPSCMSDQK KSHLDQAVED LKQQQKGAES RAFNEKPSCM SAQKKSHLDQ
1501: GIQDLKQQRK GAFHDMLIKL AATVEQKEYW ELSTQEV
0101: PPSSVLQSPT FVLPPLPPPA ILQSPTFAPP SVPSPVLQSP TFAPPPLPPP VLQSPTFAPL SLPPPPVLQS STFAPPSLPP PPVLQWPTVA PPPLRPSPQI
0201: PPPANVLQAQ LQHANQAREL VLAYHRGEWC RSAIAATAAT AGSSVEVPPR APAQHPGAAG WGGNPCASCG LPELPAATII CDACERGFHE SCVNVRCPPP
0301: PVPTPGVRVR RPEVAVNEDW LCPECEIAGA RRAVPLHTNE DPVAVTIQEI TRQVSVADGA HSTELATPHF EGLQLNSTTP FDVNHCMPAF DHPHCFSMRQ
0401: QFPHVGQNAI ADGNTEQRSN HSCHKRRDSP QISALPKLSE KNEFGSSSTF MQPSLSTKAP APSPTEKTNP PKPPKFLAET CNRQPHHGSV SLPVQYQDFF
0501: ITNLGEIDKN ASYHNCQQIW PVGFTSYWHD RVTGSLFECE VCDGGSSGPL FKVRRLPCSV FPLPVASTIL SQNGARKADT TKTKESSSFI GDAANDMEDN
0601: LYMMMDIPSE TNQDFLSCLA NDTEDKRTSL DCNDVQSPNM MSQILPSNSE NVPPTKEANF NDQIGEFTFE GTSSSSVWGV ISFAMVEACE KMYKEHGHLV
0701: FSCTHSCENH LLNRGSGCQK FDGPYAPLTR FCSSNGPSIP RITEKKNDVE STYTLLKKWL YHDRIGLDLD FVQEIVESLP RSMSCINYQF LCNRTEFLSS
0801: VTVANGLLLS VHKDGQSNGD TSCGRQGAVT GVHDHGQPSG SIIRELPPGR PISRKLQPES AADVFKIWEF LGRFAEIIHL KEVPSYEELE DELADPWPTC
0901: ASQKESLSKG IEQCRDYSSP MNSPANASIS HLNTESGLSN NEEIVSVFIP VETSSMKEAG LDKLAAQTLG RCTGTVLPGV HLTLIKVLFG ELLSKLNIDQ
1001: KEPKPKRGRK KDTEILISTK EFSVDMLTAN RLTWPELARR YMLAISSING FMDVSNISCR EVVKLFRCLQ GDGGIMCGAV PGVAGMEKDA QLLLEAENLI
1101: CSSLPSDGNK VFMMDYKYSS EVHIADNRTL PDWAEQLEPV RKLPTNVGTR IRKCVYEALD RKPPEWARKI LEHSVSKEVY KANACGPTKK AVLSVLSEAC
1201: RVIVPQKPEN PRNERKTISI LEVILKKCRI ALRQAISADE YKLLGNLLGT MPVNFNEYED QAILGFSGMM PRPLDFRIID IRLAMGAYCG SWETFSEDVQ
1301: EVIRNMQIIF ADQADVLQMV EEFSKTFESM YKTEVLDLVQ KFDCYLSSEN TGSEIQEELH DILTAATKLP KAPWEYGICK VCGIDRDDDN VLLCDDCDSE
1401: YHTYCLKPPL ARIPKGDWFC PSCMLKKSHL DQGAQDLKQR RKGAESHAFN DKPSCMSDQK KSHLDQAVED LKQQQKGAES RAFNEKPSCM SAQKKSHLDQ
1501: GIQDLKQQRK GAFHDMLIKL AATVEQKEYW ELSTQEV
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.