Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0596900-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G01460.1 | Os03t0596900-01 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G123360.1 | Barley | cytosol, nucleus | 9.31 | 73.95 |
| VIT_13s0047g00420.t01 | Wine grape | cytosol | 5.4 | 53.12 |
| VIT_13s0101g00020.t01 | Wine grape | cytosol | 5.29 | 40.98 |
| TraesCS4A01G325100.1 | Wheat | plastid | 11.85 | 39.3 |
| TraesCS5B01G537600.1 | Wheat | mitochondrion, plastid | 12.38 | 39.26 |
| TraesCS5B01G570700.1 | Wheat | mitochondrion | 11.32 | 35.67 |
| EES04674 | Sorghum | nucleus | 66.35 | 29.66 |
| TraesCS6D01G159400.1 | Wheat | nucleus | 64.55 | 29.17 |
| TraesCS6A01G169600.1 | Wheat | nucleus | 64.34 | 29.06 |
| HORVU6Hr1G034680.3 | Barley | nucleus | 64.23 | 28.99 |
| TraesCS6B01G197500.1 | Wheat | nucleus | 63.92 | 28.93 |
| Zm00001d053697_P007 | Maize | nucleus | 65.5 | 28.83 |
| TraesCS4A01G324900.1 | Wheat | cytosol, mitochondrion, nucleus, vacuole | 46.45 | 26.85 |
| GSMUA_Achr3P12190_001 | Banana | nucleus | 38.1 | 17.27 |
| VIT_01s0026g00150.t01 | Wine grape | nucleus | 31.85 | 15.07 |
| KRH20317 | Soybean | nucleus | 34.92 | 14.99 |
| KRG93338 | Soybean | nucleus | 34.07 | 14.8 |
| Solyc05g005640.2.1 | Tomato | nucleus | 30.58 | 14.44 |
| VIT_14s0066g01450.t01 | Wine grape | nucleus | 30.9 | 13.94 |
| Bra040518.1-P | Field mustard | nucleus | 31.43 | 13.86 |
| CDY37520 | Canola | nucleus | 31.01 | 13.67 |
| CDY49055 | Canola | nucleus | 30.9 | 13.66 |
| CDY28674 | Canola | nucleus | 31.43 | 13.56 |
| AT3G01460.1 | Thale cress | nucleus | 30.58 | 13.28 |
| Bra039117.1-P | Field mustard | nucleus | 25.08 | 11.64 |
| Os01t0883400-00 | Rice | extracellular | 2.65 | 11.31 |
| HORVU5Hr1G123350.3 | Barley | cytosol | 10.58 | 11.27 |
| Os08t0105000-01 | Rice | nucleus | 5.61 | 9.41 |
| HORVU5Hr1G123390.2 | Barley | nucleus | 10.48 | 6.44 |
| TraesCS5D01G556000.1 | Wheat | cytosol, extracellular, nucleus | 0.11 | 0.6 |
| TraesCS3A01G530300.1 | Wheat | cytosol, extracellular, mitochondrion, nucleus | 0.11 | 0.6 |
| TraesCS5D01G556100.1 | Wheat | nucleus | 0.11 | 0.35 |
| Os01t0547200-01 | Rice | nucleus | 0.21 | 0.22 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A0P0VFU0 | ProteinID:BAS77416.1 | ProteinID:BAS77417.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005720 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010216 | GO:GO:0016043 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0040029 | GO:GO:0046872 | GO:GO:0061630 | GO:GO:0090308 |
| InterPro:IPR013083 | InterPro:IPR019787 | EnsemblPlantsGene:Os02g0192400 | EnsemblPlants:Os02t0192400-01 | PFAM:PF00628 | PFAM:PF15612 |
| ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR14140 | PANTHER:PTHR14140:SF29 | SMART:SM00249 | SUPFAM:SSF57903 |
| UniParc:UPI000393B58B | InterPro:WHIM1_dom | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
Zinc finger, PHD-type domain containing protein. (Os02t0192400-01);Hypothetical conserved gene. (Os02t0192400-02)
Coordinates
chr2:+:5146169..5151128
Molecular Weight (calculated)
106386.0 Da
IEP (calculated)
4.840
GRAVY (calculated)
-0.740
Length
945 amino acids
Sequence
(BLAST)
(BLAST)
001: IRNLHTAFGD RPDVLEMVVA LSQSFESLYK TEVLDLVEKF DKYLSDKNAG SEMHEELHDI LTAANSLPKA PWEDGVCKVC GIDRDDDSVL LCDKCDSEYH
101: TYCLNPPLAR IPEGNWYCPS CMLGQTKAHH DQGVQDVKRQ QKKFVGEEAH AFQEELNKLA TAMEEKEYWD LNMQERIYLL KFLCDEMLNT ALIREHLDQC
201: SDKLGDLQQK FRASNFELKD LKYKEEMRTS YARQSRSSKT EQHFNNSSGP VENQQQCTPT ALDHLEEAEQ GNVGVNLNNP ADGVPDGQLN VGKPYKSDKD
301: ISSASMVEER KSSGLSEQPS GMAIDQIDGD AIDEGSQSCE KRSLGAKSST CDNLNLKDTE FSTPGRELPD ERASTSFQDN LEASSTKSIE LDADNNEMDT
401: LSDDISKLQD SISLLESQIN MASSRRECLG KDSIGRLYWV IGRPGKRPWL VADGSMLKPK ERDISMVNSY PPSAFDCKGW NSASIFIYES DEEIQCLLDW
501: LRDYDPREKE LKDSILQWQR HFCHQSSSPL VDPPISGPKG EQLMELPNTK AAVILEQKYG LQLDQDTSDL PKKRGKKIKL SSEDRTYRCD CLEPVWPSRY
601: HCLTCHETYL ISTEFEGHND GKCSKIHQSP DESRENDEPK VKVTKSDTKE KDSLECSSVI EPSSDRKLMQ CPYDFEEICR KFVTNDSNKE TVKQIGLNGS
701: NGVPSFVPSP AFFLEPAIVQ SQNRKDDELK DWTSSLEECN AMSAQKLVQE VSKSGQSCPG NVGDEKVQKS KKPTPDNTSG EEAHSTTGKP TRLLAVNGGL
801: VPESSLRPLI GRNSHILKQQ KINLLDIEAA LPEEALRASK CQQIRRRSWR AFVKDAESIS QMVLAANLLE GMIKAEFLKN DWWYWSSFTA AMKTSTVSSL
901: ALRVYTLDDC IIYSKDQVPS VEPADNTRSG NRGGRRRREL ESLAS
101: TYCLNPPLAR IPEGNWYCPS CMLGQTKAHH DQGVQDVKRQ QKKFVGEEAH AFQEELNKLA TAMEEKEYWD LNMQERIYLL KFLCDEMLNT ALIREHLDQC
201: SDKLGDLQQK FRASNFELKD LKYKEEMRTS YARQSRSSKT EQHFNNSSGP VENQQQCTPT ALDHLEEAEQ GNVGVNLNNP ADGVPDGQLN VGKPYKSDKD
301: ISSASMVEER KSSGLSEQPS GMAIDQIDGD AIDEGSQSCE KRSLGAKSST CDNLNLKDTE FSTPGRELPD ERASTSFQDN LEASSTKSIE LDADNNEMDT
401: LSDDISKLQD SISLLESQIN MASSRRECLG KDSIGRLYWV IGRPGKRPWL VADGSMLKPK ERDISMVNSY PPSAFDCKGW NSASIFIYES DEEIQCLLDW
501: LRDYDPREKE LKDSILQWQR HFCHQSSSPL VDPPISGPKG EQLMELPNTK AAVILEQKYG LQLDQDTSDL PKKRGKKIKL SSEDRTYRCD CLEPVWPSRY
601: HCLTCHETYL ISTEFEGHND GKCSKIHQSP DESRENDEPK VKVTKSDTKE KDSLECSSVI EPSSDRKLMQ CPYDFEEICR KFVTNDSNKE TVKQIGLNGS
701: NGVPSFVPSP AFFLEPAIVQ SQNRKDDELK DWTSSLEECN AMSAQKLVQE VSKSGQSCPG NVGDEKVQKS KKPTPDNTSG EEAHSTTGKP TRLLAVNGGL
801: VPESSLRPLI GRNSHILKQQ KINLLDIEAA LPEEALRASK CQQIRRRSWR AFVKDAESIS QMVLAANLLE GMIKAEFLKN DWWYWSSFTA AMKTSTVSSL
901: ALRVYTLDDC IIYSKDQVPS VEPADNTRSG NRGGRRRREL ESLAS
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.