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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G01460.1 HORVU4Hr1G035250.1 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G159400.1 Wheat nucleus 95.85 95.98
TraesCS6A01G169600.1 Wheat nucleus 95.8 95.89
TraesCS6B01G197500.1 Wheat nucleus 95.51 95.79
HORVU5Hr1G123360.1 Barley cytosol, nucleus 5.21 91.6
HORVU5Hr1G123350.3 Barley cytosol 29.66 70.01
Os02t0192400-01 Rice nucleus 28.99 64.23
EES04674 Sorghum nucleus 62.66 62.06
Zm00001d053697_P007 Maize nucleus 61.7 60.18
HORVU5Hr1G123390.2 Barley nucleus 42.93 58.49
VIT_13s0047g00420.t01 Wine grape cytosol 2.58 56.25
VIT_13s0101g00020.t01 Wine grape cytosol 2.67 45.9
GSMUA_Achr3P12190_001 Banana nucleus 35.91 36.07
VIT_01s0026g00150.t01 Wine grape nucleus 31.9 33.43
VIT_14s0066g01450.t01 Wine grape nucleus 33.38 33.37
KRG93338 Soybean nucleus 34.05 32.78
KRH20317 Soybean nucleus 34.24 32.56
Bra040518.1-P Field mustard nucleus 31.66 30.94
AT3G01460.1 Thale cress nucleus 31.95 30.74
CDY49055 Canola nucleus 31.33 30.7
CDY37520 Canola nucleus 31.33 30.61
CDY28674 Canola nucleus 31.76 30.37
Solyc05g005640.2.1 Tomato nucleus 28.84 30.17
Bra039117.1-P Field mustard nucleus 28.84 29.67
HORVU7Hr1G077650.5 Barley nucleus, plastid 4.58 17.08
Protein Annotations
Gene3D:1.20.920.10Gene3D:3.30.40.10MapMan:35.1UniProt:A0A287TWB8InterPro:BromodomainInterPro:Bromodomain-like_sf
ncoils:CoilInterPro:DDT_domInterPro:FYrich_CInterPro:FYrich_NGO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0046872
EnsemblPlantsGene:HORVU6Hr1G034680EnsemblPlants:HORVU6Hr1G034680.3InterPro:IPR001487InterPro:IPR003888InterPro:IPR003889InterPro:IPR013083
InterPro:IPR018501InterPro:IPR019787InterPro:IPR036427PFAM:PF00439PFAM:PF00628PFAM:PF15612
PFAM:PF15613ScanProsite:PS01359PFscan:PS50014PFscan:PS50016PFscan:PS50827PFscan:PS51542
PFscan:PS51543PANTHER:PTHR14140PANTHER:PTHR14140:SF29SMART:SM00249SUPFAM:SSF47370SUPFAM:SSF57903
UniParc:UPI000B47BF39InterPro:WHIM1_domInterPro:WHIM2_domInterPro:Zinc_finger_PHD-type_CSInterPro:Znf_FYVE_PHDInterPro:Znf_PHD
InterPro:Znf_PHD-fingerInterPro:Znf_RING/FYVE/PHDSEG:seg:::
Description
No Description!
Coordinates
chrchr6H:+:163562144..163587369
Molecular Weight (calculated)
231552.0 Da
IEP (calculated)
5.312
GRAVY (calculated)
-0.504
Length
2094 amino acids
Sequence
(BLAST)
0001: MDRPPHLDID LNEAPSPPPS PPEAVPQSPP REFAAPIFAP PPPLLLTPPP PPQPQPPANA QAQLLLAHQA REIALAYHRG ESWRLAAATA IAAATAGSSV
0101: EVPPQAQHPG VAGWGNPPPP CASCGLPELP GATIICDACE RGFHESCVHV WGPLMRQPPP PPLPTPPGVR RPPVAVNEDW MCPACEIGGA HSKRWKLRAV
0201: PLDINAAPRE DPVAVTVGDI TRQVAVAGGA HLTELATPRF EGLQLNNTTP FDGNLFMPAF GLPHCFSMRQ QFPPVDQNFI ADGNIEQRSN HTRRRRRDFP
0301: QTSALPKFSE KHEFGSSSIL MEPSSFTKAT APSPTEERNP LKPPKFLVEN CNRQPHHHSV VLPVQYQDFF ITSLGEIDKQ ASYHNCHQIW PVGFTSYWHD
0401: RVTGSLFECE VCDGGSFGPL FKVRRLPCSV FPLPEASTIL SQNGARKADT TETTESSSFI GNAANDMDDD LYMILDVPSE TNQDFLSCLT SDTEDKKTSL
0501: GCNDVQSSNM MSKVLPSNSE NVPPSKEANI NDQIGEFTFE GTSSSSVWRM ISCAMVEACE KMYKEHGHLV FSCTHSSENN LLNKGSGCQN FDGPYAALTR
0601: FCSSNGPSIP RVIEKKNDVE STYTLLKKWL YHDRIGLDLE FVQEIVESLP RSRSCINYQF LCNRAEFHSS MTVASGLLIS VHKDGQSNGD MSYGRHGVVT
0701: GLHDHAQPSG SSIRELPPGR PISNKLPPES AGDVFQIWEF LGRFAEIIGL KEVPSYEQLE DELVDPWPVC GNQKETLSKV IQQCRDHSSP MNSPANVSIS
0801: HSNSESGLSN NEEIVSVFIP VETSSMKEAG QDKLAAQTIG RCTGVVLPGV HLALFKVLFG ELLSKVAIFV DPNIDPKESK PRRGRKKDTE SIISAKEFNF
0901: DMLTANKLTW PELARRYMLA ISSINGCMDV SDISSREGVK LFRCLQGDGG ILCGAVPGVA GMEKDALLLL EAENLICSSI SSEGNKVFMM DYKYTDMIDS
1001: AEVPIADNRT LPDWAEPLEP VRKLPTNVGT RIRKCVYEAL DRKPPEWARK ILEHSISKEV YKGNASGPTK KAVLSVLSEA CRVIVPQKPE NPRNERKTIS
1101: ISEVVLKKCR IALRHAISSD ESKLFGNLLG TTLMNSNENE DEGILGFSGM VPRPLDFRTI DTRLAMGAYY GSWETFFEDV QEVIRNLHTA FADRADVVEM
1201: VAELSQSLES LYKTEVLDLV QKFDCHLSNE NTDSEIQEEL QDILTAATKL PKAPWEDGVC KVCGIDRDDE SVLLCDECDS EYHTYCLNPP LARIPQGDWF
1301: CPSCMLKPKK KSRLDQGAQD SKRQRKGAES NAFHDKPSCM SGQKKSHLDQ GVQDLKRQRK GAFHDILIKL AAAMEQKEYW ELSTQERINM LKFLCDEMLN
1401: TVLVREHIEK CPDKLNDLQQ KFRALNSELK DLKYKEEMRT SYARQSRWGK TEQHISNCSG LAENQQNEVA IASDHVEESE QGNTGVSLNH PAEGSPPGQL
1501: NVGKPCKSDN GMPMVEENKS LGLSEQPSGT GSDLIEGNIM NEGSRDNFNL VDTPISEREP VATPLNTPGG ELPDENASTS QDNLKMSTTR SLEQGADNGE
1601: MDTLSDEISK VQESIGTVES QLNMSSLRRD CLGKDSLGRL YWVLGRSGKR PLLVADGSTL ICKERDINMV NSYPPSTSDC KGWNSASIVI YESDEEIRSL
1701: VDWLREYDPR EKELKDAIQQ WQRHLYHLGN FVLSDPPVSK GANSEQQLMD LPSTKAGAIL EKTCRCDCLE PIWPARHHCI ACHETCSTST EYEEHAGKCN
1801: GDVKEKDSVD PSSTAESRKL KSCPYDFEEI CRKFTTNDSN KEIVKDIGLI GSNGVPSFVP SPASFLEPPV ILHKNKKDDI PNDWVSSLEE CQTMSAQKLG
1901: QEGSNSGQNC PGSTGDENVS KSKKAASDST SCEEASSATD KPTRLLAVNG GLVPESSLRP VIGRNSHILK QQKINLLDID AALPEEALRA SKSQQIRRRS
2001: WRAFVKHAES ISEMVLATSV LESMIKSEFL KNDWWYWSSF TVAMKTSTVS SLALRIYTLD DCIMYTKEPN TMPADSTKVV NKGKRRKEPE PSGS
Best Arabidopsis Sequence Match ( AT3G01460.1 )
(BLAST)
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.