Skip to main content
crop-pal logo
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G169600.1 Wheat nucleus 98.04 97.99
TraesCS6B01G197500.1 Wheat nucleus 97.56 97.7
HORVU6Hr1G034680.3 Barley nucleus 95.98 95.85
TraesCS5D01G556100.1 Wheat nucleus 10.81 80.14
TraesCS5D01G556000.1 Wheat cytosol, extracellular, nucleus 5.4 68.07
Os02t0192400-01 Rice nucleus 29.17 64.55
EES04674 Sorghum nucleus 62.75 62.06
Zm00001d053697_P007 Maize nucleus 61.88 60.27
VIT_13s0047g00420.t01 Wine grape cytosol 2.58 56.25
VIT_13s0101g00020.t01 Wine grape cytosol 2.68 45.9
GSMUA_Achr3P12190_001 Banana nucleus 35.87 35.97
VIT_01s0026g00150.t01 Wine grape nucleus 32.23 33.73
VIT_14s0066g01450.t01 Wine grape nucleus 33.52 33.46
KRG93338 Soybean nucleus 34.24 32.92
KRH20317 Soybean nucleus 34.43 32.7
Bra040518.1-P Field mustard nucleus 31.85 31.08
CDY49055 Canola nucleus 31.47 30.79
AT3G01460.1 Thale cress nucleus 32.04 30.79
CDY37520 Canola nucleus 31.47 30.7
CDY28674 Canola nucleus 31.95 30.5
Solyc05g005640.2.1 Tomato nucleus 29.08 30.37
Bra039117.1-P Field mustard nucleus 28.93 29.72
TraesCS7D01G321100.1 Wheat nucleus, plastid 4.3 15.99
TraesCS3D01G202300.1 Wheat nucleus, plasma membrane 5.4 10.42
Protein Annotations
Gene3D:1.20.920.10Gene3D:3.30.40.10MapMan:35.1InterPro:BromodomainInterPro:Bromodomain-like_sfncoils:Coil
InterPro:DDT_domInterPro:FYrich_CInterPro:FYrich_NGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634InterPro:IPR001487InterPro:IPR003888
InterPro:IPR003889InterPro:IPR013083InterPro:IPR018501InterPro:IPR019787InterPro:IPR036427PFAM:PF00439
PFAM:PF00628PFAM:PF15612PFAM:PF15613ScanProsite:PS01359PFscan:PS50016PFscan:PS50827
PFscan:PS51542PFscan:PS51543PANTHER:PTHR14140PANTHER:PTHR14140:SF29SMART:SM00249SUPFAM:SSF47370
SUPFAM:SSF57903EnsemblPlantsGene:TraesCS6D01G159400EnsemblPlants:TraesCS6D01G159400.1InterPro:WHIM1_domInterPro:WHIM2_domInterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-fingerInterPro:Znf_RING/FYVE/PHDTIGR:cd15519SEG:seg
Description
No Description!
Coordinates
chr6D:-:136695073..136721418
Molecular Weight (calculated)
231631.0 Da
IEP (calculated)
5.387
GRAVY (calculated)
-0.515
Length
2091 amino acids
Sequence
(BLAST)
0001: MDRPPHLDID LNEAPSPPPS PPAAVPQSPP RGFAAPIFAP PPPPPPPPPP QPQPPANAQA QLLVAHQARE IALAYHRGES WRLAAATAIA AATAGSSVEV
0101: PPPAQHPGVA GWGNPPPPCA SCGLPELPGA TIICDACERG FHESCVHVWG PLMRQPPPPP LPTPPGVRRP PVAVNEDWMC PACEIGGAHS KRWKLRAVPL
0201: DINAAPREDP VAVTVGDITR VSVADGAHLT ELATPRFEGL QLNNTTPFDG NHFMPAFGLP HCFSIRQQFP PVEQNFIADG NIEQRSNHTR RRRRDFPQTS
0301: ALPKFSEKHE FVSSSILMEP SFFMKATAPS PTEERNPLKP PKFLAENCNR QPHHRSVGLP VQYQDFFITS LGEIDKQASY HNCHQIWPVG FTSYWHDRVT
0401: GSLFECEVCD GGSFGPLFRV RRLPCSVFPL PEASTILSQN GARKADTIET KESSSFIGDA ANDMDDDLYM IRDVPSETNQ DFLSCLTNDS EDKMTSLGCN
0501: DVQSSNMMLQ ILPSNSENVP PSKEANINDQ IGEFTFEGTS SSSVWRMISC AMVEACEKMY KEHGHLVFSC THSSGNHLLN KGSGCQNFDG PYTPLTRFCS
0601: SNGPSIPRVI EKKNDVESTY TLLKKWLYHD RIGLDLEFVQ EIVESLPRSR SCINYQFLCN RAEFHSSMTV ASGLLISVHK DGQSNGDMSY DRHGAVAGLH
0701: DHAQPSGSSI RELPPGHPIS HKLPPESAGD VFQIWEFLGR FAEIIGLKEV PSYEQLEDEL VDPWPVCGNQ KETLSKGIQQ CRDYSSPMNS PANVSISHSN
0801: SESGLSNNEE IVSVFIPVET SSMKEAGQDK LAAQTLGRCT GVVLPGVHLA LFKVLFGELL SKVAIFVDPN IDPKESKPRR GRKKDTESLI STKEFNFDML
0901: TANKLTWPEL ARRYMLAISS INGCMDVSDI SSREGVKLFR CLQGDGGILC GAVPGVAGME KDALLLLEAE NLICSSLSSE GNKVFMMDYK YTDMIDSAEV
1001: PTADNRTLPD WAEPLEPVRK LPTNVGTRIR KCVYEALDRK PPEWARKILE HSISKEVYKG NASGPTKKAV LSVLSEACRV IVPQKPENPR NERKTISISE
1101: VILKKCRIAL RHAISSDESK LFGNLLGTTL MNSNENEDEG ILGFSGMVPR PLDFRTIDTR LAMGAYCGSW ETFFEDVQEV IRNLHTAFAD RADVVEMVAE
1201: LSQSLESLYK TEVLDLVQKF DSHLSNENTD SEIHEELHDI LTAATKLPKA PWEEGVCKVC GIDRDDESVL LCDECDSEYH TYCLNPPLAR IPQGDWFCPS
1301: CMLKPKKKSR LDQGAQDSKR QRKGAESHAF HDKPSCMSGQ KKSHLDQGVQ DLKRQRKGAF HDILIKLTAA MEQKEYWELS TQERINMLKF LCDEMLNTVL
1401: VREHIEKCPD KLNDLQQKFR ALNFELKDLK YKEEMRTSYA RQSRWSKTEQ HVSNCSALPE NQQNEVAIAS DHLEESDQGN TGVNLNHPAE GTPPGQLNVG
1501: KPCKSDNDMS MVEENKSLGL SEQPSGTGSD QIEGNIMNEG SRDNFNLVDT PIAEREPVAT PLSTPGGELP DENASASQDN LKMSTTRSLE QAADNGEMDT
1601: LSDEISKVQE SIGTVESQLN MSSLRRDCLG KDSLGRLYWV LGRSGKRPLL VADGSMLICK EKDINMVNSY PPSTSDCKGW NSASVVIYES DDEIRSLVDW
1701: LREYDPREKE LKDAIQQWQR HLYHLGNFVL SDPPISKGSN SEQQLMDLPS TKAGAILEKT CRCDCLEPIW PARHHCVACH ETYSTSTEYE EHAGKCNGDV
1801: KEKDSVDPSS TAESRKLKSC PYDFEEICRK FTMNDSNKEI VKDIGLIGSN GVPSFVPSPA SYLEPPVILN KNKKDDIPND WVSSLEECQA MSAQKLGQEG
1901: SNSGQNCSGS TGDENVSKSK KPASDSTSCE EASSATDKPT RLLAVNGGLV PESSLRPVIG RNSHILKQQK INLLDIDAAL PEEALRASKS QQIRRRSWRA
2001: FVKHAESISE MVLATSVLES MIKSEFLKND WWYWSSFTVA MKTSTVSSLA LRIYTLDDCI MYTKEPNTML ADSTKVVNKG KRRKEPEPSA S
Best Arabidopsis Sequence Match ( AT3G01460.1 )
(BLAST)
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.