Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- plasma membrane 2
- mitochondrion 2
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G231800.2 | Wheat | nucleus | 92.8 | 92.98 |
| KXG32724 | Sorghum | nucleus | 40.77 | 36.83 |
| Zm00001d011158_P001 | Maize | nucleus | 39.21 | 35.93 |
| Os01t0547200-01 | Rice | nucleus | 27.58 | 33.63 |
| GSMUA_Achr5P01220_001 | Banana | nucleus | 16.42 | 32.6 |
| GSMUA_Achr3P22100_001 | Banana | extracellular, vacuole | 11.35 | 31.38 |
| Bra019757.1-P | Field mustard | cytosol | 8.21 | 31.01 |
| CDX98073 | Canola | cytosol | 8.21 | 31.01 |
| GSMUA_Achr11P... | Banana | nucleus | 16.7 | 30.68 |
| PGSC0003DMT400046398 | Potato | nucleus | 8.03 | 30.1 |
| Bra003689.1-P | Field mustard | nucleus | 11.44 | 26.84 |
| CDX68064 | Canola | nucleus | 11.44 | 26.84 |
| TraesCS7D01G321100.1 | Wheat | nucleus, plastid | 13.65 | 26.29 |
| CDX79193 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 11.9 | 25.9 |
| CDX88353 | Canola | nucleus | 10.89 | 24.48 |
| AT1G77250.1 | Thale cress | nucleus | 11.53 | 23.95 |
| CDX87531 | Canola | nucleus | 10.79 | 23.64 |
| Bra015682.1-P | Field mustard | nucleus | 10.79 | 23.64 |
| VIT_18s0001g01580.t01 | Wine grape | nucleus | 12.64 | 21.89 |
| KRH53317 | Soybean | nucleus | 12.45 | 20.9 |
| Solyc04g058190.2.1 | Tomato | nucleus | 11.44 | 20.56 |
| KRH18055 | Soybean | nucleus | 14.39 | 19.43 |
| KRH16456 | Soybean | nucleus | 13.65 | 18.43 |
| TraesCS5D01G556100.1 | Wheat | nucleus | 2.68 | 10.28 |
| TraesCSU01G205800.1 | Wheat | cytosol, nucleus, plastid | 4.98 | 6.59 |
| TraesCS6D01G159400.1 | Wheat | nucleus | 10.42 | 5.4 |
| TraesCS5D01G556000.1 | Wheat | cytosol, extracellular, nucleus | 0.65 | 4.22 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G202300.1 | EnsemblPlantsGene:TraesCS3D01G202300 | Gene3D:2.30.30.1150 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:IPR019787 |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10615 | PANTHER:PTHR10615:SF158 |
| PFAM:PF00628 | PFscan:PS50016 | SMART:SM00249 | SUPFAM:SSF57903 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr3D:-:246577202..246606799
Molecular Weight (calculated)
122406.0 Da
IEP (calculated)
7.528
GRAVY (calculated)
-0.719
Length
1084 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRIIRSLPFL APLLLRGVRD IGWEHAVDLD GNKKRWQCKW CDLCRSGGVT TLKAHLTDSS CPKIPMEMSK QVLHFVEEKR AARQLFNRDP WPPYKKIDGV
0101: SLFCSEGKEE GTVSYKNGQQ PSNNGMHMQT SGNCTIDELA ARSNQCGTEH SGQPVEDYEQ SKKGSDCAEE QLPIENGKHH VLNNEHHIVD KNNGNPQNRE
0201: KLNLECDNSI QGAVTTLKAH LTGSEEEGTV PCKDDQQPSN NGMHMQTSEK CAIDQLAARS NQCSKHHCGQ PVENYEQSKI CSDWPEEQLP MEHEKHHVLN
0301: NEHQIVDKNT ENSQNKQILK HPRKTRFNLR KHIVIIDEIA RHWRCRYCGM DGHGKTSRLH YHLAGVFRHP KCTSVPKEVF AKAKHHILIK RRPGMKKTGQ
0401: QAPPEPQILA QSSVILENND PAFSNLPQLP INDLSSEVHS SYPTRLRDNA WEHSLVFDRE KGHWKCKWCS LEGYHGVTRL KWHLVGWQNH PRCCKIPEDA
0501: AKRVRDQMIS REKKKVRRSG PHAGIDSGDI LCSSMSSQFD EDHFTIAVLN SSSSQAFDEA NRTSNTCNTL SNTISGSQPL MEGPHGILYS NKNKSEMLSR
0601: RSDCWSHWRY VLNGLMHLHG VQEGAGIQSC IRDVLHSCSE FESLRDKVEM DSDRTVSTNT GIAECKNVLV DILRSEDFAL LCNVLRKTVH QDEERTKYFD
0701: FGVIDSRMKN GEYGCAPEIF KDDLKLLWEN LKMAGQDIID LANNLSSLTE ASYTNQVGRQ RGSRDCEEEL KGAVLGSSEP KKLVESATSV PSTSQGCQPL
0801: DYPDRTNVSD VQKGSACDQC GKETRGVSTV ICNVCKLVCH MSCIDPPIRS TSTGSWYCKG CRSTTCNESA QGGYEPNCVH GNCVLCKRLE VCSHPECKEQ
0901: TPVGKSRATV LSSTEGRELS NIDPGGSCKI CGTPEEDAKR FLICGHSHCP YKYYHICCLK SKQIASDMQR DKPCWYCPSC LCRVCLSDRD DDLTILCDGC
1001: DEAYHLYCIT PRRTWIPKGK WYCSRCSVER AKAGMRRYEK KMLKQHRKDD DARLESRNFA AVDLLLSAAE KLREDEQVVA CADY
0101: SLFCSEGKEE GTVSYKNGQQ PSNNGMHMQT SGNCTIDELA ARSNQCGTEH SGQPVEDYEQ SKKGSDCAEE QLPIENGKHH VLNNEHHIVD KNNGNPQNRE
0201: KLNLECDNSI QGAVTTLKAH LTGSEEEGTV PCKDDQQPSN NGMHMQTSEK CAIDQLAARS NQCSKHHCGQ PVENYEQSKI CSDWPEEQLP MEHEKHHVLN
0301: NEHQIVDKNT ENSQNKQILK HPRKTRFNLR KHIVIIDEIA RHWRCRYCGM DGHGKTSRLH YHLAGVFRHP KCTSVPKEVF AKAKHHILIK RRPGMKKTGQ
0401: QAPPEPQILA QSSVILENND PAFSNLPQLP INDLSSEVHS SYPTRLRDNA WEHSLVFDRE KGHWKCKWCS LEGYHGVTRL KWHLVGWQNH PRCCKIPEDA
0501: AKRVRDQMIS REKKKVRRSG PHAGIDSGDI LCSSMSSQFD EDHFTIAVLN SSSSQAFDEA NRTSNTCNTL SNTISGSQPL MEGPHGILYS NKNKSEMLSR
0601: RSDCWSHWRY VLNGLMHLHG VQEGAGIQSC IRDVLHSCSE FESLRDKVEM DSDRTVSTNT GIAECKNVLV DILRSEDFAL LCNVLRKTVH QDEERTKYFD
0701: FGVIDSRMKN GEYGCAPEIF KDDLKLLWEN LKMAGQDIID LANNLSSLTE ASYTNQVGRQ RGSRDCEEEL KGAVLGSSEP KKLVESATSV PSTSQGCQPL
0801: DYPDRTNVSD VQKGSACDQC GKETRGVSTV ICNVCKLVCH MSCIDPPIRS TSTGSWYCKG CRSTTCNESA QGGYEPNCVH GNCVLCKRLE VCSHPECKEQ
0901: TPVGKSRATV LSSTEGRELS NIDPGGSCKI CGTPEEDAKR FLICGHSHCP YKYYHICCLK SKQIASDMQR DKPCWYCPSC LCRVCLSDRD DDLTILCDGC
1001: DEAYHLYCIT PRRTWIPKGK WYCSRCSVER AKAGMRRYEK KMLKQHRKDD DARLESRNFA AVDLLLSAAE KLREDEQVVA CADY
001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK
Arabidopsis Description
At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.