Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98073 | Canola | cytosol | 38.7 | 70.38 |
| Bra019757.1-P | Field mustard | cytosol | 38.7 | 70.38 |
| Bra003689.1-P | Field mustard | nucleus | 53.45 | 60.39 |
| CDX68064 | Canola | nucleus | 53.45 | 60.39 |
| CDX79193 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 55.17 | 57.83 |
| CDX88353 | Canola | nucleus | 51.92 | 56.22 |
| CDX87531 | Canola | nucleus | 52.68 | 55.56 |
| Bra015682.1-P | Field mustard | nucleus | 52.49 | 55.35 |
| PGSC0003DMT400046398 | Potato | nucleus | 22.99 | 41.52 |
| EES01867 | Sorghum | nucleus | 11.69 | 35.06 |
| Zm00001d042613_P001 | Maize | cytosol | 11.88 | 34.07 |
| VIT_18s0001g01580.t01 | Wine grape | nucleus | 34.48 | 28.75 |
| Solyc04g058190.2.1 | Tomato | nucleus | 32.76 | 28.36 |
| KRH53317 | Soybean | nucleus | 35.06 | 28.33 |
| GSMUA_Achr5P01220_001 | Banana | nucleus | 29.12 | 27.84 |
| GSMUA_Achr3P22100_001 | Banana | extracellular, vacuole | 20.69 | 27.55 |
| Os01t0883400-00 | Rice | extracellular | 11.49 | 27.15 |
| GSMUA_Achr11P... | Banana | nucleus | 29.69 | 26.27 |
| Zm00001d035008_P001 | Maize | nucleus, plastid | 25.86 | 24.32 |
| Zm00001d049736_P001 | Maize | nucleus, plastid | 25.67 | 24.01 |
| KXG24174 | Sorghum | nucleus | 23.75 | 22.5 |
| KRH18055 | Soybean | nucleus | 33.91 | 22.04 |
| Os08t0105000-01 | Rice | nucleus | 23.37 | 21.67 |
| KRH16456 | Soybean | nucleus | 33.14 | 21.54 |
| TraesCS7A01G324700.2 | Wheat | nucleus, plastid | 23.18 | 21.42 |
| TraesCS7B01G225200.1 | Wheat | nucleus, plastid | 22.99 | 21.39 |
| HORVU7Hr1G077650.5 | Barley | nucleus, plastid | 22.99 | 21.35 |
| TraesCS7D01G321100.1 | Wheat | nucleus, plastid | 22.99 | 21.31 |
| TraesCS3D01G202300.1 | Wheat | nucleus, plasma membrane | 23.95 | 11.53 |
| TraesCS3B01G231800.2 | Wheat | nucleus | 23.37 | 11.28 |
| Zm00001d011158_P001 | Maize | nucleus | 24.14 | 10.65 |
| KXG32724 | Sorghum | nucleus | 24.14 | 10.5 |
| Os01t0547200-01 | Rice | nucleus | 7.09 | 4.16 |
| TraesCSU01G205800.1 | Wheat | cytosol, nucleus, plastid | 5.94 | 3.78 |
| AT3G01460.1 | Thale cress | nucleus | 15.33 | 3.68 |
Protein Annotations
| Gene3D:2.30.30.1150 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:844061 | ProteinID:AEE35954.1 | ArrayExpress:AT1G77250 |
| EnsemblPlantsGene:AT1G77250 | RefSeq:AT1G77250 | TAIR:AT1G77250 | RefSeq:AT1G77250-TAIR-G | EnsemblPlants:AT1G77250.1 | TAIR:AT1G77250.1 |
| Unigene:At.50042 | EMBL:BT025330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | RefSeq:NP_177849.2 | PFAM:PF00628 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR10615 |
| PANTHER:PTHR10615:SF158 | UniProt:Q1JPM3 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000034F552 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
Coordinates
chr1:-:29020176..29023474
Molecular Weight (calculated)
58384.6 Da
IEP (calculated)
6.580
GRAVY (calculated)
-0.751
Length
522 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.