Factsheet for Zm00001d049736_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035008_P001	Maize	nucleus, plastid	77.06	77.48
KXG24174	Sorghum	nucleus	69.89	70.78
TraesCS7A01G324700.2	Wheat	nucleus, plastid	46.06	45.49
TraesCS7D01G321100.1	Wheat	nucleus, plastid	45.7	45.29
TraesCS7B01G225200.1	Wheat	nucleus, plastid	45.16	44.92
HORVU7Hr1G077650.5	Barley	nucleus, plastid	44.98	44.66
Os08t0105000-01	Rice	nucleus	42.65	42.27
GSMUA_Achr5P01220_001	Banana	nucleus	32.44	33.15
GSMUA_Achr11P...	Banana	nucleus	33.69	31.86
PGSC0003DMT400046398	Potato	nucleus	15.95	30.8
Bra019757.1-P	Field mustard	cytosol	15.05	29.27
CDX98073	Canola	cytosol	15.05	29.27
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	20.07	28.57
Zm00001d042613_P001	Maize	cytosol	9.14	28.02
CDX87531	Canola	nucleus	24.19	27.27
Bra015682.1-P	Field mustard	nucleus	24.01	27.07
Bra003689.1-P	Field mustard	nucleus	22.4	27.06
CDX68064	Canola	nucleus	22.4	27.06
CDX88353	Canola	nucleus	23.3	26.97
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	23.12	25.9
AT1G77250.1	Thale cress	nucleus	24.01	25.67
Solyc04g058190.2.1	Tomato	nucleus	27.24	25.21
VIT_18s0001g01580.t01	Wine grape	nucleus	25.63	22.84
KRH53317	Soybean	nucleus	25.81	22.29
KRH18055	Soybean	nucleus	25.09	17.43
KRH16456	Soybean	nucleus	24.37	16.94
Zm00001d011158_P001	Maize	nucleus	22.58	10.65
Zm00001d053697_P007	Maize	nucleus	14.16	3.68
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	4.48	3.05

Protein Annotations

EntrezGene:100281389	Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:AQK51247.1	UniProt:B6SV09
EMBL:BT054518	EMBL:EU956574	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083
InterPro:IPR019787	EMBL:KJ727862	PFAM:PF00628	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR10615
PANTHER:PTHR10615:SF123	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI000182B378	InterPro:Zinc_finger_PHD-type_CS	EnsemblPlantsGene:Zm00001d049736
EnsemblPlants:Zm00001d049736_P001	EnsemblPlants:Zm00001d049736_T001	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

PHD-transcription factor 13RING/FYVE/PHD-type zinc finger family protein

Coordinates

chr4:-:42106178..42110394

Molecular Weight (calculated)

61241.1 Da

IEP (calculated)

6.725

GRAVY (calculated)

-0.553

Length

558 amino acids

Sequence
(BLAST)

001: MASDGAPRGR RPKRPASGGL VQPDVLTYKR RRRGTGANAG HSAVTSGPDP DPVKNQMSAV VHATNSQQGG RQTLDRHWRS WRDTLEGVLR STAVNQSAGG
101: IQNCIRDALR YNGWHPTEHG NLVDDRGTDE EDATGALHSE ESSGALVKLE DGTVASLEAN KAMCHDTLFD ILISEKFAML CDLLAATFHG SKPDDVIGLQ
201: IIDAKMRNGD YAQNPALFDH DIKQIWKKFE HVGQEMAGLA SSLLLISQAS NQKQASDISE IDVAEHKIEE TSLVGVTRKA LRKFTPPCDS GYSTIPRRTG
301: TSGSDGICKD CGRKADSKGR IICDRCEAAY HVSCLKLAID EEAPAKWYCP TCVEPDVPLK SNNHGRAHEG CDVCEWLEVE KPEEPAEEPE LAVKTQESSV
401: SSIVEDSEPD LSITALANLC KLCGTCEDEN KKFVVCGHGY CSFKFYHALC LKESQIASEK QRNLKCWYCP SCLCRRCFKN KDDEKIVLCD GCDEAYHTYC
501: MDPPRSSVPR GKWFCTPCSA WRSANGMQRY EKSILQSVKR VPDAKGPKVQ AAAAAPGK

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.