Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87531 | Canola | nucleus | 82.37 | 80.2 |
| CDX98073 | Canola | cytosol | 35.06 | 58.88 |
| CDX79193 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 56.02 | 54.22 |
| CDX68064 | Canola | nucleus | 51.45 | 53.68 |
| AT1G77250.1 | Thale cress | nucleus | 56.22 | 51.92 |
| PGSC0003DMT400046398 | Potato | nucleus | 24.07 | 40.14 |
| Zm00001d042613_P001 | Maize | cytosol | 13.07 | 34.62 |
| EES01867 | Sorghum | nucleus | 12.45 | 34.48 |
| Os01t0883400-00 | Rice | extracellular | 12.66 | 27.6 |
| GSMUA_Achr5P01220_001 | Banana | nucleus | 31.12 | 27.47 |
| KRH53317 | Soybean | nucleus | 35.06 | 26.16 |
| Solyc04g058190.2.1 | Tomato | nucleus | 32.37 | 25.87 |
| GSMUA_Achr11P... | Banana | nucleus | 31.33 | 25.59 |
| VIT_18s0001g01580.t01 | Wine grape | nucleus | 33.2 | 25.56 |
| GSMUA_Achr3P22100_001 | Banana | extracellular, vacuole | 20.12 | 24.74 |
| Zm00001d035008_P001 | Maize | nucleus, plastid | 27.39 | 23.78 |
| Zm00001d049736_P001 | Maize | nucleus, plastid | 26.97 | 23.3 |
| KXG24174 | Sorghum | nucleus | 25.73 | 22.5 |
| TraesCS7B01G225200.1 | Wheat | nucleus, plastid | 25.52 | 21.93 |
| HORVU7Hr1G077650.5 | Barley | nucleus, plastid | 25.52 | 21.89 |
| Os08t0105000-01 | Rice | nucleus | 25.52 | 21.85 |
| TraesCS7D01G321100.1 | Wheat | nucleus, plastid | 25.52 | 21.85 |
| KRH18055 | Soybean | nucleus | 36.31 | 21.79 |
| TraesCS7A01G324700.2 | Wheat | nucleus, plastid | 25.52 | 21.77 |
| KRH16456 | Soybean | nucleus | 35.48 | 21.3 |
| TraesCS3D01G202300.1 | Wheat | nucleus, plasma membrane | 24.48 | 10.89 |
| TraesCS3B01G231800.2 | Wheat | nucleus | 24.07 | 10.72 |
| KXG32724 | Sorghum | nucleus | 25.93 | 10.42 |
| Zm00001d011158_P001 | Maize | nucleus | 24.69 | 10.06 |
| CDY37520 | Canola | nucleus | 14.32 | 3.22 |
| CDY49055 | Canola | nucleus | 14.11 | 3.18 |
| TraesCSU01G205800.1 | Wheat | cytosol, nucleus, plastid | 5.39 | 3.17 |
| CDY28674 | Canola | nucleus | 13.9 | 3.06 |
| Os01t0547200-01 | Rice | nucleus | 5.19 | 2.81 |
Protein Annotations
| EnsemblPlants:CDX88353 | EnsemblPlantsGene:GSBRNA2T00147875001 | Gene3D:3.30.40.10 | GO:A0A078DM53 | InterPro:IPR013083 | InterPro:IPR019787 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10615 |
| PANTHER:PTHR10615:SF158 | PFAM:PF00628 | PFscan:PS50016 | ProteinID:CDX88353 | ProteinID:CDX88353.1 | ScanProsite:PS01359 |
| SEG:seg | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0004EE1958 | MapMan:35.1 | : |
Description
BnaC06g37970D
Coordinates
chrLK031855:-:515399..518120
Molecular Weight (calculated)
53149.0 Da
IEP (calculated)
5.931
GRAVY (calculated)
-0.589
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MIVDEVMSNG DGRESSQPNG TLNMANASSR DNKRRKVNGM CEMVSTDGLS GSRESVACEL NGQSFTGGTH LTRELPQLSN PDEPTTEPPK YETVTAGCQN
101: VLSQVLASKE FASLSKLLSE NLQGVKIEDL PCRTLIDTRM QEGAYEGSHV LFSTDLQEVW KKLQDVGNGM AVLAGSLLDL SKASCTEQLK QFNTVDPNPH
201: PNVETTRNDS VEDACKLCGE KAVVKDCLAC DHCEDMYHVS CAHPGEKEMS SDTWYCLNCT ANGFGSPHEN CVVCEKKKTE KLLIKTDNNG CVETSAERKE
301: ESNMMNHGGE AMETKIDSEL CRTCGTKVEK GDGNRFITCD HPFCPHKYYH IRCLTSKQIK LHNVSWYCSS CLCRNCLTDK DDDKIVLCDG CDDAYHIYCM
401: KPPCASVPDG EWFCRTCKVA IQKVRKFRNV VEKKKVGAVQ KLKGKMNESK PGSKGKGGLD NSVGGMDMLL NAADTLKDQE QM
101: VLSQVLASKE FASLSKLLSE NLQGVKIEDL PCRTLIDTRM QEGAYEGSHV LFSTDLQEVW KKLQDVGNGM AVLAGSLLDL SKASCTEQLK QFNTVDPNPH
201: PNVETTRNDS VEDACKLCGE KAVVKDCLAC DHCEDMYHVS CAHPGEKEMS SDTWYCLNCT ANGFGSPHEN CVVCEKKKTE KLLIKTDNNG CVETSAERKE
301: ESNMMNHGGE AMETKIDSEL CRTCGTKVEK GDGNRFITCD HPFCPHKYYH IRCLTSKQIK LHNVSWYCSS CLCRNCLTDK DDDKIVLCDG CDDAYHIYCM
401: KPPCASVPDG EWFCRTCKVA IQKVRKFRNV VEKKKVGAVQ KLKGKMNESK PGSKGKGGLD NSVGGMDMLL NAADTLKDQE QM
001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK
Arabidopsis Description
At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.