Factsheet for Os01t0883400-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01867	Sorghum	nucleus	31.22	39.66
Zm00001d042613_P001	Maize	cytosol	32.13	39.01
PGSC0003DMT400046398	Potato	nucleus	25.34	19.38
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	32.13	18.11
Bra019757.1-P	Field mustard	cytosol	20.36	15.68
CDX98073	Canola	cytosol	20.36	15.68
Bra003689.1-P	Field mustard	nucleus	28.96	13.85
CDX68064	Canola	nucleus	28.96	13.85
GSMUA_Achr5P01220_001	Banana	nucleus	32.13	13.0
CDX88353	Canola	nucleus	27.6	12.66
CDX87531	Canola	nucleus	27.6	12.32
Bra015682.1-P	Field mustard	nucleus	27.6	12.32
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.6	12.25
GSMUA_Achr11P...	Banana	nucleus	31.67	11.86
Os08t0105000-01	Rice	nucleus	29.86	11.72
AT1G77250.1	Thale cress	nucleus	27.15	11.49
Solyc04g058190.2.1	Tomato	nucleus	27.15	9.95
KRH53317	Soybean	nucleus	28.96	9.91
VIT_18s0001g01580.t01	Wine grape	nucleus	27.6	9.74
KRH18055	Soybean	nucleus	23.98	6.6
KRH16456	Soybean	nucleus	23.08	6.35
Os02t0192400-01	Rice	nucleus	11.31	2.65
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	7.69	2.07
Os01t0547200-01	Rice	nucleus	2.26	0.56

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A0P0VB64	ProteinID:BAS75580.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787
EnsemblPlantsGene:Os01g0883400	EnsemblPlants:Os01t0883400-00	PFAM:PF00628	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR10615
PANTHER:PTHR10615:SF158	SMART:SM00249	SUPFAM:SSF57903	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0003939B08
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Similar to PHD finger protein-like protein (Fragment). (Os01t0883400-00)

Coordinates

chr1:+:38344272..38344937

Molecular Weight (calculated)

24891.9 Da

IEP (calculated)

4.592

GRAVY (calculated)

-0.108

Length

221 amino acids

Sequence
(BLAST)

001: MSSERITFMC AYIITSLTLS ILSILQQLVV TNSEIVRDKA SIEDEAMDNG ARALIELSQG TPGSFCKVCN EVEKPNKRFL ICAHSLCPYK FYHIRCLRYE
101: QIASSEQQGN EYWYCPSCLC RVCKVDRDDE QIILCDGCDE GYHLYCLIPP LTLVPEGEWH CSSCIVQEEK ETKRRLHGKD IATNVSMLET DGFAELEAAN
201: VLMLLKNSST DGEIVVSPVS Q

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.