CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042613_P001	Maize	cytosol	65.52	62.64
Os01t0883400-00	Rice	extracellular	39.66	31.22
Bra019757.1-P	Field mustard	cytosol	30.46	18.47
CDX98073	Canola	cytosol	30.46	18.47
PGSC0003DMT400046398	Potato	nucleus	29.31	17.65
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	36.21	16.07
Bra003689.1-P	Field mustard	nucleus	34.48	12.99
CDX68064	Canola	nucleus	34.48	12.99
GSMUA_Achr5P01220_001	Banana	nucleus	40.23	12.82
CDX87531	Canola	nucleus	35.63	12.53
Bra015682.1-P	Field mustard	nucleus	35.63	12.53
CDX88353	Canola	nucleus	34.48	12.45
AT1G77250.1	Thale cress	nucleus	35.06	11.69
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	32.76	11.45
GSMUA_Achr11P...	Banana	nucleus	37.36	11.02
KXG24174	Sorghum	nucleus	30.46	9.62
VIT_18s0001g01580.t01	Wine grape	nucleus	32.76	9.11
KRH53317	Soybean	nucleus	33.33	8.98
Solyc04g058190.2.1	Tomato	nucleus	30.46	8.79
KRH18055	Soybean	nucleus	32.76	7.1
KRH16456	Soybean	nucleus	31.03	6.72
KXG32724	Sorghum	nucleus	39.66	5.75
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	7.47	1.59
EES04674	Sorghum	nucleus	12.07	0.99

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:C5XEL3	EnsemblPlants:EES01867	ProteinID:EES01867	ProteinID:EES01867.2
GO:GO:0003674	GO:GO:0003824	GO:GO:0004674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	InterPro:IPR013083
InterPro:IPR019787	PFAM:PF00628	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR10615	PANTHER:PTHR10615:SF158
SMART:SM00249	EnsemblPlantsGene:SORBI_3003G379400	SUPFAM:SSF57903	UniParc:UPI00081AB59D	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:69286692..69288366

Molecular Weight (calculated)

19902.9 Da

IEP (calculated)

6.469

GRAVY (calculated)

-0.498

Length

174 amino acids

Sequence
(BLAST)

001: MAPSQLPELE LSPTAIFTRC KVCGGCEEKD KRFLVCSHSE CFYKYYHVRC LTKEQIASDV QMGSQLWYCP SCLCRVCLCD TDDDKIILCD CCDQAYHLYC
101: LSPPKTKVPT KYWDCDPCKK RKEKEKRILM LHRKDYDGDI LKSTEIDGLD LLLNAAENST GDKETEVATT TGKK

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.