CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011158_P001	Maize	nucleus	78.75	79.88
Os01t0547200-01	Rice	nucleus	33.33	44.99
TraesCS3D01G202300.1	Wheat	nucleus, plasma membrane	36.83	40.77
TraesCS3B01G231800.2	Wheat	nucleus	36.58	40.57
EES01867	Sorghum	nucleus	5.75	39.66
GSMUA_Achr5P01220_001	Banana	nucleus	14.5	31.87
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	10.08	30.87
GSMUA_Achr11P...	Banana	nucleus	15.0	30.51
CDX98073	Canola	cytosol	7.25	30.31
Bra019757.1-P	Field mustard	cytosol	7.25	30.31
PGSC0003DMT400046398	Potato	nucleus	6.92	28.72
Bra003689.1-P	Field mustard	nucleus	10.33	26.84
CDX68064	Canola	nucleus	10.33	26.84
CDX88353	Canola	nucleus	10.42	25.93
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	10.67	25.7
Bra015682.1-P	Field mustard	nucleus	10.33	25.05
CDX87531	Canola	nucleus	10.33	25.05
KXG24174	Sorghum	nucleus	11.42	24.86
AT1G77250.1	Thale cress	nucleus	10.5	24.14
VIT_18s0001g01580.t01	Wine grape	nucleus	11.67	22.36
KRH53317	Soybean	nucleus	11.33	21.05
Solyc04g058190.2.1	Tomato	nucleus	9.92	19.73
KRH18055	Soybean	nucleus	11.92	17.81
KRH16456	Soybean	nucleus	11.83	17.68
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	4.75	6.95
EES04674	Sorghum	nucleus	9.25	5.25

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1B6Q485	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR003656	InterPro:IPR013083
InterPro:IPR019787	EnsemblPlants:KXG32724	ProteinID:KXG32724	ProteinID:KXG32724.1	PFAM:PF00628	PFAM:PF02892
PFscan:PS50016	PFscan:PS50089	PFscan:PS50808	PANTHER:PTHR10615	PANTHER:PTHR10615:SF158	SMART:SM00249
EnsemblPlantsGene:SORBI_3003G188300	SUPFAM:SSF57903	UniParc:UPI00081AC156	InterPro:Znf_BED	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:50764580..50776120

Molecular Weight (calculated)

136240.0 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.783

Length

1200 amino acids

Sequence
(BLAST)

0001: MDEGGSQGIK KVHFRDSSSQ HPIVTYKRRR QQKPQTQQQL PQSPPPQQHQ PEPQPLQQVE PQPQVEPEPN AGDVPAQQSK DTFWKSRDMG WKYGIMIDEN
0101: RQHWKCMYCG LIRHGGGVSR LKRHLAGDLD VKMCPKVPAD VVEEIREHLR KKRERRKKRA AQNGGDNVRT KSPSGDADVE KDLLPSDSVL SDGTGTNVPE
0201: EVTNQTSSVH HDTTPRFPIL RARDIGWEHA VDLDGNKRRW QCKFCSLCRS GGVTTLKAHL IDDSCPNVPK EISKKVSNFI EEKRATRLLL NNYVFNVDDD
0301: FNTQVQGEVT VEYLNEQQPS RNVYVQTLDK GDINEVAAGS KQCGAESSGQ PVERCDQPEE QCTMDYGRMD QVTSNKNQIL DKNTENSKNT KMLKPCRKSE
0401: FNTRKHIIIV DQSARHWRCR YCGMDGYGKK FWLHYHLAGA FHQPKCPNVP REVFAKARRH VLTKRRLKKN KAEQQIPSSP HILGQSGEER QNSDPLCGNQ
0501: SQLSINNEPR EVHDYPAVLR DSAWEHSLIY EKENGSWKCK WCSIEGDHGL TRLKWHLVGW QNHPQCPNIP MDVAEKMKDQ MMSKEEQKAR SGLFDGNGYC
0601: DVLCSSKSSQ LDQDHLTATI HDRCSSQAFA NSELKGCNML SSTTLLSQES SNPQVHHEDP QVCHEQERNE VATSSEPGCE KGQRMQWQSQ NKPMMEEGPH
0701: GNGLCGDTNK LEEQKSDFGS SDCWRYVLDR LMHLPDVQED AGIGTCIRDA LLYGCAEFGT VADKVEMDRD KTVNANTARC QNILMDVLRS ENFALLCSVL
0801: CRTVHQDGER TRYFDFGVID SRMKNGNYGH EPELFMHDLK LLWEDLKVAG QDIIHLANNL SSLTEDSYEK LVGRERGSDD GELNGAVVAR SEPKNLVQSN
0901: ALVPLTSQGF NQLDQPGPSY LSDVYKDSIC NQCGKEARVG SVLKCYRCML PCHISCIQAT DSFISTGRWC CKNCSAGSKE PVEGDMVLAH YYPNCLHENC
1001: VVCDRLAACR SPKCEDTPNE NSRAMVISSV DSFADPELPE IDTCYSCKIC GDTEEDEKRF LICGHVHCLY KYYHIRCLMS KQISSNVQRD QPCWYCPSCL
1101: CRVCLSDKDD HLTILCDGCD EAYHLYCITP RRTSVPKGHW YCSSCSVERA KEGMRQYERT LKLHQKDDAE LQSWNYDGVD LLLSAAEQLR EDELLVTRTN

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.