Factsheet for Bra003689.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68064	Canola	nucleus	100.0	100.0
Bra019757.1-P	Field mustard	cytosol	61.26	98.61
AT1G77250.1	Thale cress	nucleus	60.39	53.45
Bra015682.1-P	Field mustard	nucleus	55.84	52.12
PGSC0003DMT400046398	Potato	nucleus	24.68	39.45
EES01867	Sorghum	nucleus	12.99	34.48
Zm00001d042613_P001	Maize	cytosol	12.99	32.97
Os01t0883400-00	Rice	extracellular	13.85	28.96
GSMUA_Achr5P01220_001	Banana	nucleus	30.3	25.64
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	21.64	25.51
Solyc04g058190.2.1	Tomato	nucleus	32.68	25.04
KRH53317	Soybean	nucleus	34.42	24.61
GSMUA_Achr11P...	Banana	nucleus	30.95	24.24
VIT_18s0001g01580.t01	Wine grape	nucleus	31.6	23.32
Zm00001d049736_P001	Maize	nucleus, plastid	27.06	22.4
Zm00001d035008_P001	Maize	nucleus, plastid	26.84	22.34
KXG24174	Sorghum	nucleus	25.97	21.78
Os08t0105000-01	Rice	nucleus	25.76	21.14
HORVU7Hr1G077650.5	Barley	nucleus, plastid	25.11	20.64
TraesCS7B01G225200.1	Wheat	nucleus, plastid	24.46	20.14
TraesCS7D01G321100.1	Wheat	nucleus, plastid	24.46	20.07
TraesCS7A01G324700.2	Wheat	nucleus, plastid	24.46	20.0
KRH18055	Soybean	nucleus	34.42	19.8
KRH16456	Soybean	nucleus	33.98	19.55
TraesCS3D01G202300.1	Wheat	nucleus, plasma membrane	26.84	11.44
TraesCS3B01G231800.2	Wheat	nucleus	25.97	11.09
KXG32724	Sorghum	nucleus	26.84	10.33
Zm00001d011158_P001	Maize	nucleus	25.97	10.14
Bra040518.1-P	Field mustard	nucleus	16.67	3.59
Os01t0547200-01	Rice	nucleus	6.06	3.15
Bra039117.1-P	Field mustard	nucleus	12.55	2.85
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	4.98	2.8

Protein Annotations

Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra003689	EnsemblPlants:Bra003689.1	EnsemblPlants:Bra003689.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:M4CHK6
PFAM:PF00628	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR10615	PANTHER:PTHR10615:SF158	SMART:SM00249
SUPFAM:SSF57903	UniParc:UPI00025414DE	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

AT1G77250 (E=5e-172) | PHD finger family protein

Coordinates

chrA07:+:14487872..14490010

Molecular Weight (calculated)

50939.0 Da

IEP (calculated)

7.125

GRAVY (calculated)

-0.694

Length

462 amino acids

Sequence
(BLAST)

001: MTSNGEGTEK CNGVNSCGGG ANERSRGNKK LQVYKRRKLG RRSVSGSKCK EDERVSVEAG VSHSGSQESV ASELDNQTGE LPELPNPNKP TTEPKYETVT
101: AGCQNVLSQV LASKEFASLS KLLSEVKIED LTCRTLIDTR MQEGVYEGSP KLFSTDLQED VGNDMAVLGN SLLELSKTFS TEQLKKFYTR ELKPNPNAEN
201: IRNNCVYDTC KLCGEKAAVT DCLACDHCED MYHVSCAHPG GKGMSTGSWY CINCTANGIG SPHENCVVCE RMKTDSRRVD KSTECKEDSN ESEENSSCNI
301: NHGGHKVEVK RDSELCRTCG TKVVENGRFI TCDHPFCPHK YYHIRCLTAK LVKLHGGARW YCSSCLCRNC LTDKDDDKIV MCDGCDDAYH IYCMKPPRAS
401: VPDEEWFCKT CNAASQKVRK VRKAYEKKMG TLQKQNGNLK SSGDSVGGGV DMLLNAADTL KD

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.