Factsheet for GSMUA_Achr5P01220_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	72.34	66.95
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	32.42	45.15
EES01867	Sorghum	nucleus	12.82	40.23
Zm00001d042613_P001	Maize	cytosol	12.82	38.46
PGSC0003DMT400046398	Potato	nucleus	19.6	37.02
Bra019757.1-P	Field mustard	cytosol	19.41	36.93
CDX98073	Canola	cytosol	19.41	36.93
TraesCS7B01G225200.1	Wheat	nucleus, plastid	37.18	36.19
HORVU7Hr1G077650.5	Barley	nucleus, plastid	37.18	36.12
TraesCS7A01G324700.2	Wheat	nucleus, plastid	37.36	36.11
TraesCS7D01G321100.1	Wheat	nucleus, plastid	37.18	36.06
Os08t0105000-01	Rice	nucleus	34.8	33.75
Zm00001d049736_P001	Maize	nucleus, plastid	33.15	32.44
Os01t0883400-00	Rice	extracellular	13.0	32.13
Zm00001d035008_P001	Maize	nucleus, plastid	32.42	31.89
KXG24174	Sorghum	nucleus	31.87	31.58
CDX88353	Canola	nucleus	27.47	31.12
Bra003689.1-P	Field mustard	nucleus	25.64	30.3
CDX68064	Canola	nucleus	25.64	30.3
CDX87531	Canola	nucleus	26.92	29.7
Bra015682.1-P	Field mustard	nucleus	26.74	29.49
AT1G77250.1	Thale cress	nucleus	27.84	29.12
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	25.64	28.11
Solyc04g058190.2.1	Tomato	nucleus	30.4	27.53
VIT_18s0001g01580.t01	Wine grape	nucleus	30.4	26.52
KRH53317	Soybean	nucleus	30.77	26.01
KRH18055	Soybean	nucleus	31.5	21.42
KRH16456	Soybean	nucleus	30.95	21.05
TraesCS3B01G231800.2	Wheat	nucleus	32.78	16.54
TraesCS3D01G202300.1	Wheat	nucleus, plasma membrane	32.6	16.42
KXG32724	Sorghum	nucleus	31.87	14.5
Zm00001d011158_P001	Maize	nucleus	30.95	14.29
Os01t0547200-01	Rice	nucleus	5.86	3.6
GSMUA_Achr3P12190_001	Banana	nucleus	13.74	3.6
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	3.3	2.2

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr5G01220_001
EnsemblPlants:GSMUA_Achr5P01220_001	EnsemblPlants:GSMUA_Achr5T01220_001	InterPro:IPR013083	InterPro:IPR019787	UniProt:M0SUQ1	PFAM:PF00628
ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR10615	PANTHER:PTHR10615:SF158	SMART:SM00249	SUPFAM:SSF57903
UniParc:UPI0002950871	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G01220_001]

Coordinates

chr5:-:700876..704634

Molecular Weight (calculated)

61926.2 Da

IEP (calculated)

5.168

GRAVY (calculated)

-0.537

Length

546 amino acids

Sequence
(BLAST)

001: MMEPCETVSY AGTSRPEWHD RIIRHWKNVL EHQFKLSYMK PGHGIWNVLY DALSLGHSQL LRKLMMIDAI RNHEQLNGRY LVDSEVKIQG QWPDCFETAK
101: EQKLVELRAS YYKEDTNTRK CEKAFLEILI SEKFAILCDF LWDTFEENKA KTFLDFRLID SKLKNGDYER SLELYNQDVQ QIWDNMQKIG QEMIILANSL
201: SSLSRASCRK QVIEDLINAA DDPKPEEACQ IGVVQTNTAG SYPAKQLTCC GSDCSTKPDQ TEAADVYKAF TCKQCGMKAN EECSLFCDGC EAVYHFSCIK
301: PAIEEISTPS WFCAACSKNN KDSADQACAE STKGSLHQNC VVCDRLEVSE SLEDLDENGS RTRLATDSGE SSVSSMESEE PPEPSRTAVS SLCKICGTCE
401: DEEKKFLVCG HLQCPYKFYH IRCLKSSQIA SPQQQNRPCW YCPSCLCRAC LCDKDDDKIV LCDGCDEAYH TYCMKPPRTL VPKGQWYCVP CNVARAREGM
501: RRYEQWILRQ HGKNEGRQSN EAIGSMDLLL SAAEKLSSEE KLASGQ

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.