Factsheet for VIT_18s0001g01580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046398	Potato	nucleus	21.25	46.02
KRH53317	Soybean	nucleus	40.26	39.01
Solyc04g058190.2.1	Tomato	nucleus	35.94	37.31
Bra019757.1-P	Field mustard	cytosol	16.93	36.93
CDX98073	Canola	cytosol	16.93	36.93
AT1G77250.1	Thale cress	nucleus	28.75	34.48
CDX87531	Canola	nucleus	27.0	34.14
Bra015682.1-P	Field mustard	nucleus	26.84	33.94
CDX88353	Canola	nucleus	25.56	33.2
EES01867	Sorghum	nucleus	9.11	32.76
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	25.24	31.73
CDX68064	Canola	nucleus	23.32	31.6
Bra003689.1-P	Field mustard	nucleus	23.32	31.6
Zm00001d042613_P001	Maize	cytosol	8.95	30.77
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	19.17	30.61
GSMUA_Achr5P01220_001	Banana	nucleus	26.52	30.4
KRH16456	Soybean	nucleus	38.66	30.14
KRH18055	Soybean	nucleus	38.5	30.01
GSMUA_Achr11P...	Banana	nucleus	27.48	29.15
Os01t0883400-00	Rice	extracellular	9.74	27.6
Zm00001d049736_P001	Maize	nucleus, plastid	22.84	25.63
Zm00001d035008_P001	Maize	nucleus, plastid	22.2	25.05
Os08t0105000-01	Rice	nucleus	22.04	24.51
TraesCS7A01G324700.2	Wheat	nucleus, plastid	22.04	24.42
HORVU7Hr1G077650.5	Barley	nucleus, plastid	21.89	24.38
TraesCS7D01G321100.1	Wheat	nucleus, plastid	21.89	24.33
TraesCS7B01G225200.1	Wheat	nucleus, plastid	21.73	24.24
KXG24174	Sorghum	nucleus	20.13	22.87
TraesCS3B01G231800.2	Wheat	nucleus	22.36	12.94
TraesCS3D01G202300.1	Wheat	nucleus, plasma membrane	21.89	12.64
KXG32724	Sorghum	nucleus	22.36	11.67
Zm00001d011158_P001	Maize	nucleus	22.04	11.67
VIT_03s0017g01050.t01	Wine grape	endoplasmic reticulum, nucleus, vacuole	1.28	9.2
VIT_18s0122g00570.t01	Wine grape	extracellular	0.8	5.88
VIT_13s0101g00020.t01	Wine grape	cytosol	1.12	5.74
VIT_13s0047g00420.t01	Wine grape	cytosol	0.8	5.21
Os01t0547200-01	Rice	nucleus	6.23	4.39
VIT_14s0066g01450.t01	Wine grape	nucleus	14.22	4.25
VIT_01s0026g00150.t01	Wine grape	nucleus	12.46	3.9

Protein Annotations

EntrezGene:100247132	wikigene:100247132	Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CCB45443
ProteinID:CCB45443.1	ncoils:Coil	UniProt:F6H0H1	EMBL:FN595227	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR019787	EntrezGene:LOC100247132	wikigene:LOC100247132
PFAM:PF00628	PFscan:PS50016	PFscan:PS50089	PANTHER:PTHR10615	PANTHER:PTHR10615:SF158	SMART:SM00249
SUPFAM:SSF57903	UniParc:UPI0002109A50	ArrayExpress:VIT_18s0001g01580	EnsemblPlantsGene:VIT_18s0001g01580	EnsemblPlants:VIT_18s0001g01580.t01	unigene:Vvi.13243
RefSeq:XP_002284634	RefSeq:XP_002284634.2	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:2149563..2165796

Molecular Weight (calculated)

70275.9 Da

IEP (calculated)

6.352

GRAVY (calculated)

-0.407

Length

626 amino acids

Sequence
(BLAST)

001: MFGDGNTSNA DGNEHTAPAV LCRSEAVQNG FAVGTGIDVT DGSSSGGFQT YKRRKRRKGS LETEPIKDGR CLVKAGTQLA DEGFLFGRNK SLVPWREQDM
101: GLLATVKQSM DVGLLNNFSK RAVIPMIDHH AIVNGLDDSP QQHWRNIVLD QMYRSLSDSE GGIRGCVRAA LLSCPEVDHT TTIKKPVHFH KDVRCPPHTG
201: LLPNESASRS HVGVTSNGSL SESDHHTITE LCRRSFFKLI MSEKFASLCK LMLENFQGIK VDNFFDFSLI HSRMIEGAYE RSPMLFSSDV QQVWKKLQRI
301: GTEIVSLGTT LSEMSRTSYS ELVEGAVLSA SEDGKNEVCT RESDSHTKLE QLVACGVFKV CSCRHCGEKA DGRDCLVCDS CEEVYHISCV EPAVKVIPHK
401: SWYCVDCIAS RLPHENCVVC KKLNAQRTLI NGVGDDIISM NEETDMELEE SSNCITEVGI QQQKETKYFQ LCKICGSDME FGEHLLECGH PFCPNKYYHK
501: SCLTSTELRM YGPCWYCPSC LCRACLTDRD DEKIILCDGC DHAYHIYCMN PPRTSIPRGK WFCRKCDADI QKIRKAKMVF EDLERERKQK GEQVIDKDEE
601: GPMDILLNAA QTLNLQEELA AIRMDR

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.