Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0017g01050.t01 | Wine grape | endoplasmic reticulum, nucleus, vacuole | 37.65 | 36.78 |
| VIT_13s0047g00420.t01 | Wine grape | cytosol | 10.59 | 9.38 |
| VIT_13s0101g00020.t01 | Wine grape | cytosol | 10.59 | 7.38 |
| TraesCSU01G205800.1 | Wheat | cytosol, nucleus, plastid | 11.76 | 1.22 |
| TraesCS5B01G538100.1 | Wheat | nucleus | 10.59 | 1.01 |
| VIT_18s0001g01580.t01 | Wine grape | nucleus | 5.88 | 0.8 |
| VIT_01s0026g00150.t01 | Wine grape | nucleus | 15.29 | 0.65 |
| VIT_14s0066g01450.t01 | Wine grape | nucleus | 14.12 | 0.57 |
Protein Annotations
| ArrayExpress:VIT_18s0122g00570 | EMBL:AM474070 | EMBL:FN595771 | EnsemblPlants:VIT_18s0122g00570.t01 | EnsemblPlantsGene:VIT_18s0122g00570 | PANTHER:PTHR14140 |
| PANTHER:PTHR14140:SF29 | ProteinID:CAN79397 | ProteinID:CAN79397.1 | ProteinID:CCB52305 | ProteinID:CCB52305.1 | UniParc:UPI00021084D8 |
| UniProt:F6HJA7 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr18_random:+:464498..465136
Molecular Weight (calculated)
9406.1 Da
IEP (calculated)
4.083
GRAVY (calculated)
0.081
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MLEGMIKIEY LMNGWWYWSS LSAVAKTSIV SSLALCAYSL DAAIAYEKIS FNLDDWQSLA QPEMTVSPTA AEEPLSIHST SKESP
001: MSVLLKTRNF NLQLWFWLHK APSTNMTVVG YLHLCRVLQD MSLEFEGLQT EFMDLETNLA EPQVKPLVRR KLMSRKREVK NEIKKLEKLM KTISSLRSAL
101: QLMIREAPGI QKVVLILGGS PLRPQNAYEL LFTQRRDHVL GYEGDFAKSK AAEALSKKTI RALISTGAGS TSYPGPMRLF ILVHAPPTLN LPQHFLPKRD
201: FRYNRKFVPS KLRFKCRTQD NATNSPPTND LIWYQCRHVI KGLAFHQPVE E
101: QLMIREAPGI QKVVLILGGS PLRPQNAYEL LFTQRRDHVL GYEGDFAKSK AAEALSKKTI RALISTGAGS TSYPGPMRLF ILVHAPPTLN LPQHFLPKRD
201: FRYNRKFVPS KLRFKCRTQD NATNSPPTND LIWYQCRHVI KGLAFHQPVE E
Arabidopsis Description
Non-structural protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0J3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.