CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046398	Potato	nucleus	21.05	47.06
KRH18055	Soybean	nucleus	55.26	44.46
KRH16456	Soybean	nucleus	50.31	40.47
VIT_18s0001g01580.t01	Wine grape	nucleus	39.01	40.26
Bra019757.1-P	Field mustard	cytosol	17.8	40.07
CDX98073	Canola	cytosol	17.8	40.07
CDX87531	Canola	nucleus	27.55	35.96
Bra015682.1-P	Field mustard	nucleus	27.4	35.76
CDX88353	Canola	nucleus	26.16	35.06
AT1G77250.1	Thale cress	nucleus	28.33	35.06
Solyc04g058190.2.1	Tomato	nucleus	32.66	34.99
Bra003689.1-P	Field mustard	nucleus	24.61	34.42
CDX68064	Canola	nucleus	24.61	34.42
EES01867	Sorghum	nucleus	8.98	33.33
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	25.39	32.93
Zm00001d042613_P001	Maize	cytosol	9.13	32.42
GSMUA_Achr5P01220_001	Banana	nucleus	26.01	30.77
Os01t0883400-00	Rice	extracellular	9.91	28.96
GSMUA_Achr11P...	Banana	nucleus	25.54	27.97
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	16.87	27.81
Zm00001d049736_P001	Maize	nucleus, plastid	22.29	25.81
Os08t0105000-01	Rice	nucleus	22.14	25.4
Zm00001d035008_P001	Maize	nucleus, plastid	21.67	25.23
KXG24174	Sorghum	nucleus	20.74	24.32
HORVU7Hr1G077650.5	Barley	nucleus, plastid	20.59	23.67
TraesCS7B01G225200.1	Wheat	nucleus, plastid	20.43	23.53
TraesCS7D01G321100.1	Wheat	nucleus, plastid	20.43	23.45
TraesCS7A01G324700.2	Wheat	nucleus, plastid	20.43	23.36
TraesCS3D01G202300.1	Wheat	nucleus, plasma membrane	20.9	12.45
TraesCS3B01G231800.2	Wheat	nucleus	20.74	12.38
KXG32724	Sorghum	nucleus	21.05	11.33
Zm00001d011158_P001	Maize	nucleus	20.74	11.33
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	5.57	4.39
Os01t0547200-01	Rice	nucleus	6.04	4.39
KRG93338	Soybean	nucleus	13.78	4.09
KRH20317	Soybean	nucleus	13.16	3.86

Protein Annotations

EntrezGene:100795906	Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02003458	EnsemblPlantsGene:GLYMA_06G118300
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:K7KUK8
ProteinID:KRH53315.1	ProteinID:KRH53316.1	EnsemblPlants:KRH53317	ProteinID:KRH53317	ProteinID:KRH53317.1	ProteinID:KRH53318.1
ProteinID:KRH53319.1	PFAM:PF00628	PFscan:PS50016	PANTHER:PTHR10615	PANTHER:PTHR10615:SF158	SMART:SM00249
SUPFAM:SSF57903	UniParc:UPI0002339477	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD

Description

hypothetical protein

Coordinates

chr6:+:9631662..9642200

Molecular Weight (calculated)

71684.3 Da

IEP (calculated)

5.003

GRAVY (calculated)

-0.557

Length

646 amino acids

Sequence
(BLAST)

001: MGTEDGTSDA DKTEFDERVQ CLKGAVMDGG VAIVDGNCVS EEGQLLKSEA MNVGVAIADE NGVAEEGRIG KSETFCNRVA VADKGDSGGV ECLQTYKRRK
101: KSSSKGEVQE QCRKNVETST HIADQDVTKP CDVALCNTSD DCSHGQWGNI VLKHLYQSLG DGNGGIEGCI REALIHYPKH NHTTTVMETF KIDKDGQECS
201: LQFEPLSHRT EKEANGHADV MCNGGSSESP DHGVTEMCQR VLCNVLTSEK FSSLCKALLE NFQGMKPESV LDFTVMNSRM KEQAYEQSPT LFLSDIQQVW
301: RKLQDAGNEI VALAKSLSNM SRTSYSELVG IPAQSTFQDE KQVEFDCCMK PEQTQACAMY KICSCKCCGE KADDTDCLVC DSCEEIYHVS CIEPAVKEII
401: PHKSWYCANC TANVIESLHE NCVLCERLND AKTLDDVIGD GSFPTIEETQ NEFEENSNCT SDGIQVSIGE EKTPNCKICE NEVDGGKIKI CGHRFCSNKY
501: YHVRCLTINQ LKSYGHCWYC PSCLCRVCLT DQDDDRIVLC DGCDHAYHIY CMKPPRTSIP RGNWFCRKCD AGIQAIHQAK KAYEFNKPRR NGEDAAKPNA
601: NLEKKHNNKR ARELESGGAM DMLLTAANTL NFEEKEAASH IKLQRT

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.