Factsheet for Zm00001d042613_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01867	Sorghum	nucleus	62.64	65.52
Os01t0883400-00	Rice	extracellular	39.01	32.13
Bra019757.1-P	Field mustard	cytosol	29.67	18.82
CDX98073	Canola	cytosol	29.67	18.82
PGSC0003DMT400046398	Potato	nucleus	28.02	17.65
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	34.07	15.82
CDX88353	Canola	nucleus	34.62	13.07
Bra003689.1-P	Field mustard	nucleus	32.97	12.99
CDX68064	Canola	nucleus	32.97	12.99
GSMUA_Achr5P01220_001	Banana	nucleus	38.46	12.82
CDX87531	Canola	nucleus	34.07	12.53
Bra015682.1-P	Field mustard	nucleus	34.07	12.53
AT1G77250.1	Thale cress	nucleus	34.07	11.88
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	30.77	11.24
GSMUA_Achr11P...	Banana	nucleus	36.26	11.19
Zm00001d049736_P001	Maize	nucleus, plastid	28.02	9.14
KRH53317	Soybean	nucleus	32.42	9.13
Zm00001d035008_P001	Maize	nucleus, plastid	27.47	9.01
VIT_18s0001g01580.t01	Wine grape	nucleus	30.77	8.95
Solyc04g058190.2.1	Tomato	nucleus	28.57	8.62
KRH18055	Soybean	nucleus	30.22	6.85
KRH16456	Soybean	nucleus	28.57	6.48
Zm00001d011158_P001	Maize	nucleus	37.91	5.83
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	6.04	1.34
Zm00001d053697_P007	Maize	nucleus	9.89	0.84

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6N5E7	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR013083	InterPro:IPR019787	ProteinID:ONM35855.1	PFAM:PF00628	PFscan:PS50016	PANTHER:PTHR10615
PANTHER:PTHR10615:SF158	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI0008428FFE	EnsemblPlantsGene:Zm00001d042613	EnsemblPlants:Zm00001d042613_P001
EnsemblPlants:Zm00001d042613_T001	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

PHD-transcription factor 43RING/FYVE/PHD-type zinc finger family protein

Coordinates

chr3:-:173685114..173686104

Molecular Weight (calculated)

21203.8 Da

IEP (calculated)

7.815

GRAVY (calculated)

-0.529

Length

182 amino acids

Sequence
(BLAST)

001: MDPSELPELS RTAMLICCKV CGGPEEVDKR FLICDHYLCL YKYYHISCLT TEQIASDVQM GSQRWYCPSC LCRVCLCDTD DDQIILCDCC DQGYHLYCLS
101: PPRRKVPKGH WDCEPCKERR EKEKRILMLH RKDYDEDILK SGEFHGPNLL LKAAKKVKRD EEVKVAKTKS TRKCKFAFTF GN

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.