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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d053697_P007 Maize nucleus 90.35 88.96
HORVU5Hr1G123360.1 Barley cytosol, nucleus 3.88 68.91
Os02t0192400-01 Rice nucleus 29.66 66.35
TraesCS6A01G169600.1 Wheat nucleus 62.2 62.86
TraesCS6D01G159400.1 Wheat nucleus 62.06 62.75
TraesCS6B01G197500.1 Wheat nucleus 61.97 62.74
HORVU6Hr1G034680.3 Barley nucleus 62.06 62.66
HORVU5Hr1G123350.3 Barley cytosol 23.42 55.81
TraesCS4A01G324900.1 Wheat cytosol, mitochondrion, nucleus, vacuole 43.14 55.78
TraesCS5D01G556100.1 Wheat nucleus 7.05 52.84
TraesCS5D01G556000.1 Wheat cytosol, extracellular, nucleus 4.12 52.41
TraesCS3A01G530300.1 Wheat cytosol, extracellular, mitochondrion, nucleus 4.07 51.5
VIT_13s0047g00420.t01 Wine grape cytosol 2.18 47.92
HORVU5Hr1G123390.2 Barley nucleus 32.21 44.31
TraesCS4A01G325100.1 Wheat plastid 5.25 38.95
TraesCS5B01G537600.1 Wheat mitochondrion, plastid 5.44 38.59
VIT_13s0101g00020.t01 Wine grape cytosol 2.22 38.52
GSMUA_Achr3P12190_001 Banana nucleus 36.85 37.36
TraesCS5B01G570700.1 Wheat mitochondrion 5.11 36.0
VIT_01s0026g00150.t01 Wine grape nucleus 32.59 34.48
VIT_14s0066g01450.t01 Wine grape nucleus 34.06 34.37
KRH20317 Soybean nucleus 33.77 32.43
KRG93338 Soybean nucleus 33.21 32.28
Bra040518.1-P Field mustard nucleus 32.4 31.96
CDY49055 Canola nucleus 32.12 31.77
CDY37520 Canola nucleus 31.98 31.54
AT3G01460.1 Thale cress nucleus 32.45 31.53
CDY28674 Canola nucleus 32.45 31.32
Bra039117.1-P Field mustard nucleus 29.42 30.55
Solyc05g005640.2.1 Tomato nucleus 28.38 29.97
KXG24174 Sorghum nucleus 3.97 15.24
EES01867 Sorghum nucleus 0.99 12.07
KXG32724 Sorghum nucleus 5.25 9.25
Protein Annotations
Gene3D:1.20.920.10Gene3D:3.30.40.10MapMan:35.1EntrezGene:8079455InterPro:BromodomainInterPro:Bromodomain-like_sf
UniProt:C5XXD1ncoils:CoilEnsemblPlants:EES04674ProteinID:EES04674ProteinID:EES04674.2InterPro:FYrich_C
InterPro:FYrich_NGO:GO:0000003GO:GO:0003674GO:GO:0003824GO:GO:0004402GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006355GO:GO:0006464GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008270
GO:GO:0009058GO:GO:0009506GO:GO:0009628GO:GO:0009653GO:GO:0009791GO:GO:0009987
GO:GO:0010223GO:GO:0016043GO:GO:0016573GO:GO:0016740GO:GO:0019538GO:GO:0042393
GO:GO:0043966GO:GO:0043967GO:GO:0046872GO:GO:0048573InterPro:IPR001487InterPro:IPR003888
InterPro:IPR003889InterPro:IPR013083InterPro:IPR019787InterPro:IPR036427PFAM:PF00628PFAM:PF15612
ScanProsite:PS01359PFscan:PS50014PFscan:PS50016PFscan:PS51542PFscan:PS51543PANTHER:PTHR14140
PANTHER:PTHR14140:SF29SMART:SM00249EnsemblPlantsGene:SORBI_3004G075700SUPFAM:SSF47370SUPFAM:SSF57903UniParc:UPI000B423B8B
InterPro:WHIM1_domRefSeq:XP_002451698.1InterPro:Zinc_finger_PHD-type_CSInterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
hypothetical protein
Coordinates
chr4:+:6149879..6170021
Molecular Weight (calculated)
233767.0 Da
IEP (calculated)
5.090
GRAVY (calculated)
-0.512
Length
2114 amino acids
Sequence
(BLAST)
0001: MDRPPHLVID LNEAPSPPPS DTPPAQAPSP PRELAPPVQA PPPPPQQQLP PLLPPQPQPQ PPLGAPNQQA RLQQEALEGV LRVHRPLELR NTPFGPVGNV
0101: PAGLFPGLGL PLLPLPPPAP HPGEAGWGNP VPPCSSCGLP EILGGTLVCD ACERGFHPSC VRVWPPLLPP PPPPGPPGAR RPRAAANEDW ICPECERRGA
0201: RSTRWKLGAV QLDINAAPPE DPVAVITNDI RRQNISDGPQ LTVANLPHFE GVHLQNTTLY DGMQFMPAFD LAQCLGMRQN LTSMDRDLNA DGNVPQRSVN
0301: LRRRRDLPQT STLPKVADNH ELGSAGISMD PSFFNNAIEQ SPSENRSSLK PPKFLMENSN HQPHHHTVAL PVQCSDFFIT SLGEIDNRTS YHNSYQIWPV
0401: GFTSYWHDRV TGSLFECEVI DGGNFGPLFK MRRLPCSAFQ LPDASTTVCP NVVRKADTIE TREGSGSIED TTNDADDNIS MLLSDFSDTN QDFLSCLGND
0501: MEGKESLGCS NVQTSSMTVP AVLSDLGSLS LAPTNDANMY DKIGDFSYEG TSPSSVWRMV CCAMMEACEK MYKEHGHLVL FCTHSSEKSS FDYGSGRQRT
0601: DSPFDLFAKF CSSNGPKVPR FIEKENDVES TCALLKEWLY PDRIGFDMEF VQEFVESLPK SRACSNYQFL CNRTGINSSL TIASGTLIAV NKNSPSHGDV
0701: MSYGRHGSVV SGPQDHAQPS SFSIRELPPG NPISCKLPPE LAGDVLQILE FLGRFAEIIG LKELPSIEQV EDELIDPWPI HVNENGTQNY RDHTPPMNSP
0801: ANVSTSYSNG ESGITIEEMV SVFIPIETSS AREAAQNKLA AQTLGRCSGL VLPEIHLALL KVLFTELVSR VAIFVDPKFD LKESKSRRGR KRDTDTLARE
0901: LKIDMLTANN LTWPELARRY ILAVSSMSGC MDLSDISSRE GVKLFRCLQG DGGVLCGALP GVVGMEKDAS LLAEAETLIC KSSANEGNKV FMMDYKDADI
1001: VDSPEEPASD TTLPDWVKSL EPVRKLPTNV GTRIRKCVYE ALEREPPEWA RKILEHSISK EVYKGNASGP TKKAVLSVLT EACRTKVPQN TEKPRKERNI
1101: ISISEAILKR CRIALRRAIS SDESKQFANL LGTTLTNSNE NEDEGILGFP GMVSRPLDFR TIDIRLAKGA YRGSWEAFLD DVQEVIRNLQ TAFADRPEVV
1201: VMVAALSESF ESLYKAEVQD LVEKFDKYLS NENGNSEIHQ ELQDALTTAN NKLPKAPWED GVCKVCGIDR DDESVLLCDT CDSEYHTYCL NPPLARIPLG
1301: NWYCPSCTAQ THVSVQEQKK CLGEEAHVFI EKLNKLAVAM DEKEYWELSV AERIYLLKFL CDELHNTALI REHLDQCSDR SNDLQQKLRH LNYELKELKY
1401: RVETKTSYAT QSRWMKNDQI GNSSGLVENQ QRAMPTASEH LEEAEQVNVG VNLSNPAEGV PAGQLNVGKP CSTDNGISST SVIEGSKSLG LSKQPSEIVT
1501: DRTDRDSIGE GSKRFEKSLG GKSGTCDNLN VGETHSATVI IAPIGDLPDE NARASSQDNM ETSTSKLVDH DADNNESNNL LERISQLQDS ISTVESQLSM
1601: ASLRRDCLGR DSVGRLYWVT GRPSKRPRLV ADGSMLIPKD RDISMVTSHS QSTFDKGWNS ASLVMYESDE EIKSLVDWLR DIDPREKDLK DSILHWQKSL
1701: YHQASFPITD PPVSKSSKSE PPMELPNTKA FIVLEQKYGP QLDQDTSELS KRRGSKSKSG SEERVYRCDC LEPLLPFRHH CLNCHETYLT LTEYEGHNGV
1801: KCNSSNDCPT ESKENDEPKL KGTKDPVDHN CSIEPSNSGK LESCPYDFEE ICRKFITNDS NKETVKEIGL LGSNGIPSFV PSPAYFLDPP ALLNENKRND
1901: DKPNDWTSSL EECQAMSAKM SGPEGSQVGQ DFSGNAGDGQ MPKSKKPVRD GTSAKEAPST DKPTRLLTVN GGLVPESSLM PVIGRNFHIL KQLKINLLDV
2001: EAALPEEAFR ASKSQQIRRR SWRAFVKDAE LVSYVVLAIN FLQSMIKAEF LKKDWWYWSS FTAAIKTTTV SSLALRIYTL DDCIMYTKDP SLNPEPADNA
2101: RSGNKGKRKK DADS
Best Arabidopsis Sequence Match ( AT3G01460.1 )
(BLAST)
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.