Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013757_P010 | Maize | nucleus | 79.53 | 78.56 |
| Zm00001d033159_P001 | Maize | nucleus | 50.23 | 72.48 |
| Os03t0596900-01 | Rice | nucleus | 55.5 | 50.92 |
| GSMUA_Achr9P09240_001 | Banana | nucleus | 19.07 | 40.59 |
| GSMUA_Achr6P35030_001 | Banana | nucleus | 31.16 | 38.0 |
| GSMUA_Achr4P23560_001 | Banana | nucleus | 30.39 | 36.57 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 52.09 | 34.57 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 18.45 | 34.2 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 52.4 | 34.11 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 52.4 | 33.73 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 50.23 | 33.13 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 28.99 | 31.22 |
| Solyc10g006000.2.1 | Tomato | nucleus | 26.51 | 30.87 |
| Bra027748.1-P | Field mustard | nucleus | 8.37 | 30.68 |
| CDX94304 | Canola | nucleus | 19.53 | 28.83 |
| Solyc07g065490.2.1 | Tomato | nucleus | 27.91 | 28.39 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 28.99 | 27.38 |
| KRG98507 | Soybean | nucleus | 31.16 | 27.35 |
| CDY06563 | Canola | nucleus | 28.22 | 26.49 |
| EES01993 | Sorghum | nucleus | 20.78 | 26.43 |
| KRH46360 | Soybean | nucleus | 29.46 | 25.68 |
| AT5G55660.1 | Thale cress | nucleus | 29.92 | 24.81 |
| CDY28645 | Canola | nucleus | 30.39 | 24.72 |
| CDY20754 | Canola | nucleus | 29.77 | 24.18 |
| CDX89318 | Canola | nucleus | 26.36 | 24.15 |
| CDY17352 | Canola | extracellular, vacuole | 30.23 | 23.55 |
| Bra035582.1-P | Field mustard | nucleus | 28.68 | 23.3 |
| KRH46364 | Soybean | nucleus | 28.99 | 23.17 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 30.54 | 22.77 |
| Bra026415.1-P | Field mustard | nucleus | 29.46 | 22.75 |
| AT4G26630.1 | Thale cress | nucleus | 26.82 | 22.67 |
| KRG98502 | Soybean | nucleus | 25.27 | 22.33 |
| OQU91413 | Sorghum | nucleus | 33.95 | 16.21 |
| Bra010432.1-P | Field mustard | nucleus | 28.22 | 16.09 |
| CDX97358 | Canola | nucleus | 28.53 | 15.17 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.2 | EntrezGene:8064530 | UniProt:C5WTA3 | ncoils:Coil | InterPro:DEK_C |
| EnsemblPlants:EER91265 | ProteinID:EER91265 | ProteinID:EER91265.1 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006338 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0042393 | GO:GO:2000779 | PFAM:PF08766 | PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 |
| EnsemblPlantsGene:SORBI_3001G174900 | SUPFAM:SSF109715 | unigene:Sbi.3852 | UniParc:UPI0001A8228D | RefSeq:XP_002464267.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:+:14690242..14697217
Molecular Weight (calculated)
70937.7 Da
IEP (calculated)
4.749
GRAVY (calculated)
-1.425
Length
645 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKAVANGA AAADVAAPDN KDNAKEEASE SKEAVANQDA EEQNKGSENG AEGESGGDVK MAEAETTEEG DGDAGAAKQV DSGDVETDAD TKEDANAKTG
101: EGEDDKMTEA DAGSTEDKDK EEKEDEVENT NVDKQDESKE QEKGVSAEEE ENKGKETDAD EKQEQEEAEE KGSADKKDED EDEDEGEGDK MEENKEETPK
201: NKKARSARDR SQGKDKKQDG SKSREAKSLL NTPSPYGTDR PQRERKTVER LVEVIEKGPN RNFVVEKGQG TPLKDIPSVA HRISRKKPSD LKFLHSILFG
301: RKGKAVDFKG HILQFSGFVW HESDEKQRAK AKEKLDKCVK DTLLDLCWTL GIPTPKANIR KEDIVSKLLD FIAEPHSAAD SGLSDDQGSN SKKRKRGGES
401: ASKTDDSTPS RSRKKFVDGS TSSKRQKKAL QYDTDEDEDE SMNSDSEENR DEDSDEAADK QEGDYRSGKE KAGKKLSEVK ESSGKKKANT GSGHKSGPPK
501: KIIKSPVKKV SSKVHEEKGS PNDSAKVFSR KKKPTAEKEI KEKKSSGKKK VAKGKGESAE AVLPSKDDLR KTITEILKKV DFNTATFSDI LKKLDDHYKM
601: DLTPKKEAIK VMIQDELTKL SEEDEEGEGD GDKQQEQPQA KEIEA
101: EGEDDKMTEA DAGSTEDKDK EEKEDEVENT NVDKQDESKE QEKGVSAEEE ENKGKETDAD EKQEQEEAEE KGSADKKDED EDEDEGEGDK MEENKEETPK
201: NKKARSARDR SQGKDKKQDG SKSREAKSLL NTPSPYGTDR PQRERKTVER LVEVIEKGPN RNFVVEKGQG TPLKDIPSVA HRISRKKPSD LKFLHSILFG
301: RKGKAVDFKG HILQFSGFVW HESDEKQRAK AKEKLDKCVK DTLLDLCWTL GIPTPKANIR KEDIVSKLLD FIAEPHSAAD SGLSDDQGSN SKKRKRGGES
401: ASKTDDSTPS RSRKKFVDGS TSSKRQKKAL QYDTDEDEDE SMNSDSEENR DEDSDEAADK QEGDYRSGKE KAGKKLSEVK ESSGKKKANT GSGHKSGPPK
501: KIIKSPVKKV SSKVHEEKGS PNDSAKVFSR KKKPTAEKEI KEKKSSGKKK VAKGKGESAE AVLPSKDDLR KTITEILKKV DFNTATFSDI LKKLDDHYKM
601: DLTPKKEAIK VMIQDELTKL SEEDEEGEGD GDKQQEQPQA KEIEA
001: MGEEDTKVIV EPTANGTSSL QKTSDAISGK EVQENASGKE VQESKKEEDT GLEKMEIDDE GKQHEGESET GDKEVEVTEE EKKDVGEDKE QPEADKMDED
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:F4K4Y5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.