Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G55660.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT5G55660.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 75.6 | 72.37 |
| CDY28645 | Canola | nucleus | 68.72 | 71.75 |
| CDY06563 | Canola | nucleus | 53.14 | 64.05 |
| CDY20754 | Canola | nucleus | 54.11 | 56.42 |
| CDX94304 | Canola | nucleus | 29.11 | 55.15 |
| AT5G55660.1 | Thale cress | nucleus | 50.97 | 54.24 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 32.85 | 45.41 |
| CDX89318 | Canola | nucleus | 38.41 | 45.17 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 17.15 | 40.8 |
| Solyc07g065490.2.1 | Tomato | nucleus | 30.68 | 40.06 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 31.28 | 37.92 |
| KRH46360 | Soybean | nucleus | 32.61 | 36.49 |
| KRG98507 | Soybean | nucleus | 31.28 | 35.24 |
| Solyc10g006000.2.1 | Tomato | nucleus | 23.55 | 35.2 |
| KRH46364 | Soybean | nucleus | 31.76 | 32.59 |
| KRG98502 | Soybean | nucleus | 27.9 | 31.64 |
| CDY69625 | Canola | nucleus | 11.11 | 31.51 |
| CDY37915 | Canola | nucleus | 16.06 | 31.44 |
| CDY39861 | Canola | nucleus | 13.41 | 30.75 |
| CDX77921 | Canola | nucleus | 15.7 | 30.52 |
| EER91265 | Sorghum | nucleus | 23.55 | 30.23 |
| CDY62886 | Canola | nucleus | 17.51 | 29.84 |
| CDY41517 | Canola | nucleus | 17.15 | 28.98 |
| Zm00001d013757_P010 | Maize | nucleus | 22.83 | 28.94 |
| CDX97358 | Canola | nucleus | 42.03 | 28.69 |
| Zm00001d033159_P001 | Maize | nucleus | 15.46 | 28.64 |
| CDY05865 | Canola | plastid | 10.99 | 28.44 |
| CDX81185 | Canola | nucleus | 19.08 | 28.21 |
| Os03t0596900-01 | Rice | nucleus | 22.83 | 26.88 |
| CDY16716 | Canola | nucleus | 18.0 | 26.8 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 10.27 | 26.48 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 23.19 | 19.37 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 22.71 | 19.34 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 22.83 | 18.86 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 21.86 | 18.51 |
| OQU91413 | Sorghum | nucleus | 19.32 | 11.84 |
Protein Annotations
| EnsemblPlants:CDY17352 | EnsemblPlantsGene:GSBRNA2T00095458001 | Gene3D:1.10.10.60 | GO:A0A078FX90 | InterPro:DEK_C | ncoils:Coil |
| PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 | PFAM:PF08766 | PFscan:PS51257 | ProteinID:CDY17352 | ProteinID:CDY17352.1 |
| SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF109715 | UniParc:UPI0004EDF273 | UniProt:A0A078FX90 | MapMan:35.2 |
Description
BnaA10g09860DBnaA10g09860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX90]
Coordinates
chrLK032072:+:464796..469316
Molecular Weight (calculated)
92607.5 Da
IEP (calculated)
4.506
GRAVY (calculated)
-1.440
Length
828 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLKSGFASV LVRFQSLLLF AEPASFQHCV SFSCGLILLK SRLGLFVKFC IGDLLNTEIT MGEEDTKVIV EPTANGTSSL PKPSDEITGK QAEENATVKE
101: TQENKKAEDN GSEKMVIDDD IKQDEEKEVS DKETKAETEK DTAETNEDKG QPEADQMDED TDGKKLEADD GLSGGATAED TVMKESVESD DKRETDTKGA
201: ENQVVNKIDT TEGSQDKTEK ESEEEKLLGG DEGDSVDEVE KRDTSNKEEA PKERNEGEMA EDGKEEKPNK EEEVKEANKE EEDTDVNEPK EDDEKIEAKG
301: EDGNDIDDSK DEIEDKEEET KDEKEDEKEE SNDEKEDEKE KNNDDKEDEN EDSKKSSKRG KGKNEKARGK TKSEEEKKDA EPETPYSDRP VRERKSVERL
401: VAVIDKDSSK EFQVEKGKGT PLKDIPNVAY KIARKKSEEV FKLLHTILFG GRRGRAAQVK ANILRFSGYK WQGDEEKAKD KIKEKLDKCN KEKLLEFCDL
501: FDISVAKATT KKEDIVAKLF KFLEKPHATT DVPVYEKEKG AKRKRTPTKS SHAAGSSSSK RSAKSQKKTD KKSLPHSDDE SEEEKEEEEE EREHETEEED
601: EKIDEEEENE NGIPDQSDDE APQPSESEEK VESEEDSESE EETKKKKRGS RTVSGKKEST AGKSRSKKAA VSTKSSPPPT KVTQKRSAGK RKKSDDDDSD
701: TSPKASSSKR KKTEKPAKEQ SSVPSKSASK EKPGKRGGKG KDKTKEPSDE ELKNAIVDIL KEVDFNTATF TDILNRLAGM FKLDLTSRKS SIKLMIQDEL
801: TKLADEAENE VGEEDAEKEK AGGEEVKA
101: TQENKKAEDN GSEKMVIDDD IKQDEEKEVS DKETKAETEK DTAETNEDKG QPEADQMDED TDGKKLEADD GLSGGATAED TVMKESVESD DKRETDTKGA
201: ENQVVNKIDT TEGSQDKTEK ESEEEKLLGG DEGDSVDEVE KRDTSNKEEA PKERNEGEMA EDGKEEKPNK EEEVKEANKE EEDTDVNEPK EDDEKIEAKG
301: EDGNDIDDSK DEIEDKEEET KDEKEDEKEE SNDEKEDEKE KNNDDKEDEN EDSKKSSKRG KGKNEKARGK TKSEEEKKDA EPETPYSDRP VRERKSVERL
401: VAVIDKDSSK EFQVEKGKGT PLKDIPNVAY KIARKKSEEV FKLLHTILFG GRRGRAAQVK ANILRFSGYK WQGDEEKAKD KIKEKLDKCN KEKLLEFCDL
501: FDISVAKATT KKEDIVAKLF KFLEKPHATT DVPVYEKEKG AKRKRTPTKS SHAAGSSSSK RSAKSQKKTD KKSLPHSDDE SEEEKEEEEE EREHETEEED
601: EKIDEEEENE NGIPDQSDDE APQPSESEEK VESEEDSESE EETKKKKRGS RTVSGKKEST AGKSRSKKAA VSTKSSPPPT KVTQKRSAGK RKKSDDDDSD
701: TSPKASSSKR KKTEKPAKEQ SSVPSKSASK EKPGKRGGKG KDKTKEPSDE ELKNAIVDIL KEVDFNTATF TDILNRLAGM FKLDLTSRKS SIKLMIQDEL
801: TKLADEAENE VGEEDAEKEK AGGEEVKA
001: MGEEDTKVIV EPTANGTSSL QKTSDAISGK EVQENASGKE VQESKKEEDT GLEKMEIDDE GKQHEGESET GDKEVEVTEE EKKDVGEDKE QPEADKMDED
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:F4K4Y5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.