Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41517 | Canola | nucleus | 69.25 | 51.02 |
| CDY62886 | Canola | nucleus | 66.2 | 49.18 |
| CDX81185 | Canola | nucleus | 69.25 | 44.64 |
| CDY69625 | Canola | nucleus | 35.73 | 44.18 |
| CDY16716 | Canola | nucleus | 67.87 | 44.06 |
| CDY05865 | Canola | plastid | 39.06 | 44.06 |
| CDX77921 | Canola | nucleus | 49.58 | 42.02 |
| CDY37915 | Canola | nucleus | 47.92 | 40.9 |
| KRH41110 | Soybean | nucleus | 40.72 | 30.18 |
| Solyc06g072660.2.1 | Tomato | nucleus | 41.27 | 28.38 |
| VIT_17s0000g00960.t01 | Wine grape | nucleus | 44.04 | 27.89 |
| PGSC0003DMT400069255 | Potato | nucleus | 38.23 | 27.88 |
| PGSC0003DMT400081181 | Potato | nucleus | 41.83 | 27.71 |
| Solyc03g097490.2.1 | Tomato | nucleus | 40.72 | 27.32 |
| KRH63796 | Soybean | nucleus | 40.44 | 27.29 |
| TraesCS3A01G436900.1 | Wheat | nucleus | 35.18 | 27.19 |
| KRH59791 | Soybean | nucleus | 39.34 | 27.0 |
| KRH54152 | Soybean | nucleus | 40.17 | 26.41 |
| TraesCS3D01G429200.1 | Wheat | nucleus | 35.46 | 26.02 |
| Os01t0924900-01 | Rice | nucleus | 36.29 | 25.74 |
| EES01993 | Sorghum | nucleus | 35.73 | 25.44 |
| TraesCS3B01G471100.1 | Wheat | nucleus | 34.63 | 25.41 |
| GSMUA_Achr10P... | Banana | nucleus | 37.67 | 24.46 |
| GSMUA_Achr11P... | Banana | nucleus | 34.07 | 22.57 |
| Zm00001d042302_P002 | Maize | nucleus | 34.9 | 21.84 |
| HORVU3Hr1G095450.1 | Barley | plasma membrane | 34.07 | 21.62 |
| CDX94304 | Canola | nucleus | 21.05 | 17.39 |
| CDY06563 | Canola | nucleus | 31.02 | 16.3 |
| CDY20754 | Canola | nucleus | 30.75 | 13.98 |
| CDY28645 | Canola | nucleus | 30.19 | 13.75 |
| CDY17352 | Canola | extracellular, vacuole | 30.75 | 13.41 |
| CDX89318 | Canola | nucleus | 25.76 | 13.21 |
| CDX97358 | Canola | nucleus | 27.42 | 8.16 |
Protein Annotations
| EnsemblPlants:CDY39861 | EnsemblPlantsGene:GSBRNA2T00068688001 | Gene3D:1.10.10.60 | GO:A0A078HQD8 | InterPro:DEK_C | ncoils:Coil |
| PANTHER:PTHR13468 | PFAM:PF08766 | ProteinID:CDY39861 | ProteinID:CDY39861.1 | SEG:seg | SUPFAM:SSF109715 |
| UniParc:UPI0004EB206C | UniProt:A0A078HQD8 | MapMan:35.2 | : | : | : |
Description
BnaC02g42570DBnaC02g42570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQD8]
Coordinates
chrLK032458:-:255484..257309
Molecular Weight (calculated)
40811.4 Da
IEP (calculated)
5.785
GRAVY (calculated)
-1.315
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDNVSVAHQ LSKRKADDNL ILLHTILYGK KAKAQMIKKN ISQFSGFVWS EEEEEKQRGR VKEKLDKCIK EKLIFFCDVL DIPINRSTKV AVKVLEFLES
101: PKATRDVILA DQEKEARERK ITQKKKKSGE SSDTTAQRKR QTKKGDHPSD KGEGKDQGDS DSEDSKDTHE EDVTSPEEED SDHEKTETED EREEAEDEKK
201: PSDKKTSSKK ISSDTKDSKK SAEKSSKPTS SPAKKQKVDH DDESSKEKSK KQLIKPQTKG SKEKGKASKK GKAEPTREEM LEVVTKMLKE VDFNTATLSD
301: ILQKLSGHFG VDLSHRKKEV KGVITDAISE MSDVEDEEEC EVNAEVDSNK EKAEDHEKLE D
101: PKATRDVILA DQEKEARERK ITQKKKKSGE SSDTTAQRKR QTKKGDHPSD KGEGKDQGDS DSEDSKDTHE EDVTSPEEED SDHEKTETED EREEAEDEKK
201: PSDKKTSSKK ISSDTKDSKK SAEKSSKPTS SPAKKQKVDH DDESSKEKSK KQLIKPQTKG SKEKGKASKK GKAEPTREEM LEVVTKMLKE VDFNTATLSD
301: ILQKLSGHFG VDLSHRKKEV KGVITDAISE MSDVEDEEEC EVNAEVDSNK EKAEDHEKLE D
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.