CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029213.1-P	Field mustard	nucleus	78.08	80.85
CDY39861	Canola	nucleus	44.18	35.73
CDY62886	Canola	nucleus	56.16	33.74
CDY41517	Canola	nucleus	54.79	32.65
CDY16716	Canola	nucleus	59.25	31.12
CDX81185	Canola	nucleus	58.22	30.36
CDX77921	Canola	nucleus	44.18	30.28
CDY37915	Canola	nucleus	43.49	30.02
KRH41110	Soybean	nucleus	43.49	26.08
KRH63796	Soybean	nucleus	44.52	24.3
KRH59791	Soybean	nucleus	42.47	23.57
KRH54152	Soybean	nucleus	43.15	22.95
VIT_17s0000g00960.t01	Wine grape	nucleus	44.52	22.81
Solyc03g097490.2.1	Tomato	nucleus	41.44	22.49
PGSC0003DMT400081181	Potato	nucleus	41.44	22.2
CDX94304	Canola	nucleus	33.22	22.2
CDY05865	Canola	plastid	24.32	22.19
Solyc06g072660.2.1	Tomato	nucleus	39.73	22.1
TraesCS3A01G436900.1	Wheat	nucleus	34.59	21.63
TraesCS3D01G429200.1	Wheat	nucleus	35.27	20.93
GSMUA_Achr11P...	Banana	nucleus	39.04	20.92
TraesCS3B01G471100.1	Wheat	nucleus	34.93	20.73
Os01t0924900-01	Rice	nucleus	35.96	20.63
GSMUA_Achr10P...	Banana	nucleus	37.67	19.78
EES01993	Sorghum	nucleus	33.22	19.13
PGSC0003DMT400069255	Potato	nucleus	31.51	18.59
HORVU3Hr1G095450.1	Barley	plasma membrane	34.59	17.75
Zm00001d042302_P002	Maize	nucleus	31.85	16.12
CDY06563	Canola	nucleus	34.93	14.85
CDX89318	Canola	nucleus	34.25	14.2
CDY20754	Canola	nucleus	35.96	13.22
CDY28645	Canola	nucleus	31.51	11.6
CDY17352	Canola	extracellular, vacuole	31.51	11.11
CDX97358	Canola	nucleus	31.16	7.5

Protein Annotations

EnsemblPlants:CDY69625	EnsemblPlantsGene:GSBRNA2T00089534001	ncoils:Coil	PANTHER:PTHR13468	ProteinID:CDY69625	ProteinID:CDY69625.1
SEG:seg	UniParc:UPI0004EE8969	UniProt:A0A078JT62	MapMan:35.2	:	:

Description

BnaAnng31030DBnaAnng31030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JT62]

Coordinates

chrLK039891:-:1289..3455

Molecular Weight (calculated)

32979.3 Da

IEP (calculated)

5.124

GRAVY (calculated)

-1.226

Length

292 amino acids

Sequence
(BLAST)

001: MATETLEETT TPEVKSPAKD EIGAGDGPKE REEDEDGSKG GKLEDKDEEE GNVSKNSSVT QSSSERPTRE RKKVERFSLP SPTRAIPNKS VSIEKGLGTP
101: LREIPNVAHQ LSKRKADGNL ILLHTILYGK KAKAQMIKKN ISQFSGFVWS EEEEEKQRAK VKEKFDKCIK EKLIFFCDVL DIPINRSHIK KVKVAFKVLE
201: FLESPKATRD VILADQEKRK RQAKKGDHPS DKEVGKDEGD SDSEDSKDTH EEDVTAPEEE DCDHEKTETE EERDEAEDEK KPSDKKTSSK KI

Best Arabidopsis Sequence Match ( AT3G48710.1 )
(BLAST)

001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD

Arabidopsis Description

At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.