Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G55660.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT5G55660.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06563 | Canola | nucleus | 66.37 | 76.71 |
| CDY28645 | Canola | nucleus | 57.81 | 57.88 |
| CDX94304 | Canola | nucleus | 30.1 | 54.69 |
| AT5G55660.1 | Thale cress | nucleus | 53.4 | 54.5 |
| CDY17352 | Canola | extracellular, vacuole | 56.42 | 54.11 |
| CDX89318 | Canola | nucleus | 39.29 | 44.32 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 33.25 | 44.07 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 17.25 | 39.37 |
| Solyc07g065490.2.1 | Tomato | nucleus | 30.98 | 38.8 |
| Solyc10g006000.2.1 | Tomato | nucleus | 26.45 | 37.91 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 32.24 | 37.48 |
| KRH46360 | Soybean | nucleus | 33.88 | 36.35 |
| CDY69625 | Canola | nucleus | 13.22 | 35.96 |
| KRG98507 | Soybean | nucleus | 32.75 | 35.37 |
| KRG98502 | Soybean | nucleus | 30.1 | 32.74 |
| CDX77921 | Canola | nucleus | 17.51 | 32.63 |
| KRH46364 | Soybean | nucleus | 33.12 | 32.59 |
| CDY37915 | Canola | nucleus | 16.62 | 31.21 |
| CDY62886 | Canola | nucleus | 18.89 | 30.86 |
| CDY39861 | Canola | nucleus | 13.98 | 30.75 |
| EER91265 | Sorghum | nucleus | 24.18 | 29.77 |
| CDY41517 | Canola | nucleus | 18.26 | 29.59 |
| Zm00001d013757_P010 | Maize | nucleus | 24.06 | 29.25 |
| Os03t0596900-01 | Rice | nucleus | 24.81 | 28.02 |
| CDY05865 | Canola | plastid | 11.21 | 27.81 |
| CDY16716 | Canola | nucleus | 19.27 | 27.52 |
| Zm00001d033159_P001 | Maize | nucleus | 15.49 | 27.52 |
| CDX81185 | Canola | nucleus | 19.4 | 27.5 |
| CDX97358 | Canola | nucleus | 41.06 | 26.88 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 10.71 | 26.48 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 24.06 | 19.53 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 23.3 | 19.03 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 23.55 | 18.87 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 23.8 | 18.86 |
| OQU91413 | Sorghum | nucleus | 21.16 | 12.44 |
Protein Annotations
| EnsemblPlants:CDY20754 | EnsemblPlantsGene:GSBRNA2T00012980001 | Gene3D:1.10.10.60 | GO:A0A078G5T7 | InterPro:DEK_C | ncoils:Coil |
| PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 | PFAM:PF08766 | ProteinID:CDY20754 | ProteinID:CDY20754.1 | SEG:seg |
| SUPFAM:SSF109715 | UniParc:UPI0004EEA089 | UniProt:A0A078G5T7 | MapMan:35.2 | : | : |
Description
BnaA02g08940DBnaA02g08940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5T7]
Coordinates
chrLK032111:-:461974..467332
Molecular Weight (calculated)
88291.6 Da
IEP (calculated)
4.441
GRAVY (calculated)
-1.626
Length
794 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEDTNTKV TVEPTANGTT SLPKPSDAIT GKQAVENASA KETHETKKNE DAAPEKMEID EEKNEGEDKE AEAEAAEKEK ENKAETEKTE DKEQAEIAKT
101: EEDNGKPEAH KMEDEDTDGK KLEADDGVSG GATEEDTEMK EAVVSEDNKD VKGAENEGVD KIDATEGAQD KAEKESEEEK LEGGKVNGNE EEDKEEEKLA
201: GGDKEDNTEA DDNKEEAAKE NNEGKEEETN KEEAEADAKV EEAKVEDNTT ESKDENDNEN EDVEEEKEDD KDESMDEKED EKEKSNDETE GGDKEDSKKS
301: SKREKGKNEK ARGKTQSEKE KKDTESKTPY SSDRPVRERK SVERLVAVVD KDSSKEFQVE KGKGTPLKDI PNVANKISRR KPDDVLKLLH TILFGGRRGK
401: AAQVKANILR FSGYKWQGDE EKAKDKVKEK LDKCNKERLL EFCDLFDIYV GKATRKKKED IVAKLFDFLE KPHATTDDLV NEEEEKSAKR KRTPKKSSQA
501: AGSSSSKRSA KSQKKTDEAT RSDKKSLTHS DDESEEEEEE EEKEEEEAEA EEEEKEEKME EEENENGIPD KSDDEAPQPS ESEEKVESEE ESEEETKKKK
601: RVSRKVSGGK KESAAAGKSR SKKAAVSEKP SPPPKKVTQK RSAGKRKKFD DDDDTETSPK ASSSKRKKTE KPAKEQSSVP SKSAPKEKPG KRGGKGKDKN
701: KEPSDEELKT AIVDILKVVD FNTATFSDIL KRLVGKFDID LTSKKSSIKL MIQDELTKLA DEADAEEGEE EDAEKEREKA GGGSGGGGEE EVKA
101: EEDNGKPEAH KMEDEDTDGK KLEADDGVSG GATEEDTEMK EAVVSEDNKD VKGAENEGVD KIDATEGAQD KAEKESEEEK LEGGKVNGNE EEDKEEEKLA
201: GGDKEDNTEA DDNKEEAAKE NNEGKEEETN KEEAEADAKV EEAKVEDNTT ESKDENDNEN EDVEEEKEDD KDESMDEKED EKEKSNDETE GGDKEDSKKS
301: SKREKGKNEK ARGKTQSEKE KKDTESKTPY SSDRPVRERK SVERLVAVVD KDSSKEFQVE KGKGTPLKDI PNVANKISRR KPDDVLKLLH TILFGGRRGK
401: AAQVKANILR FSGYKWQGDE EKAKDKVKEK LDKCNKERLL EFCDLFDIYV GKATRKKKED IVAKLFDFLE KPHATTDDLV NEEEEKSAKR KRTPKKSSQA
501: AGSSSSKRSA KSQKKTDEAT RSDKKSLTHS DDESEEEEEE EEKEEEEAEA EEEEKEEKME EEENENGIPD KSDDEAPQPS ESEEKVESEE ESEEETKKKK
601: RVSRKVSGGK KESAAAGKSR SKKAAVSEKP SPPPKKVTQK RSAGKRKKFD DDDDTETSPK ASSSKRKKTE KPAKEQSSVP SKSAPKEKPG KRGGKGKDKN
701: KEPSDEELKT AIVDILKVVD FNTATFSDIL KRLVGKFDID LTSKKSSIKL MIQDELTKLA DEADAEEGEE EDAEKEREKA GGGSGGGGEE EVKA
001: MGEEDTKVIV EPTANGTSSL QKTSDAISGK EVQENASGKE VQESKKEEDT GLEKMEIDDE GKQHEGESET GDKEVEVTEE EKKDVGEDKE QPEADKMDED
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:F4K4Y5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.