Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37915 | Canola | nucleus | 87.09 | 87.71 |
| CDY05865 | Canola | plastid | 48.36 | 64.38 |
| AT3G48710.1 | Thale cress | nucleus | 69.48 | 64.07 |
| CDY39861 | Canola | nucleus | 42.02 | 49.58 |
| CDY69625 | Canola | nucleus | 30.28 | 44.18 |
| CDY62886 | Canola | nucleus | 50.23 | 44.03 |
| CDY41517 | Canola | nucleus | 50.0 | 43.47 |
| CDY16716 | Canola | nucleus | 53.76 | 41.19 |
| CDX81185 | Canola | nucleus | 53.29 | 40.54 |
| KRH41110 | Soybean | nucleus | 43.19 | 37.78 |
| KRH63796 | Soybean | nucleus | 46.48 | 37.01 |
| KRH59791 | Soybean | nucleus | 45.54 | 36.88 |
| KRH54152 | Soybean | nucleus | 46.71 | 36.25 |
| VIT_17s0000g00960.t01 | Wine grape | nucleus | 45.77 | 34.21 |
| TraesCS3A01G436900.1 | Wheat | nucleus | 37.09 | 33.83 |
| Solyc06g072660.2.1 | Tomato | nucleus | 41.55 | 33.71 |
| TraesCS3D01G429200.1 | Wheat | nucleus | 38.73 | 33.54 |
| Solyc03g097490.2.1 | Tomato | nucleus | 42.02 | 33.27 |
| PGSC0003DMT400081181 | Potato | nucleus | 41.78 | 32.66 |
| TraesCS3B01G471100.1 | Wheat | nucleus | 37.32 | 32.32 |
| EES01993 | Sorghum | nucleus | 37.56 | 31.56 |
| Os01t0924900-01 | Rice | nucleus | 37.56 | 31.43 |
| PGSC0003DMT400069255 | Potato | nucleus | 35.21 | 30.3 |
| GSMUA_Achr11P... | Banana | nucleus | 37.79 | 29.54 |
| GSMUA_Achr10P... | Banana | nucleus | 38.5 | 29.5 |
| HORVU3Hr1G095450.1 | Barley | plasma membrane | 35.92 | 26.89 |
| Zm00001d042302_P002 | Maize | nucleus | 35.21 | 26.0 |
| CDX94304 | Canola | nucleus | 24.65 | 24.03 |
| CDY06563 | Canola | nucleus | 31.92 | 19.8 |
| CDX89318 | Canola | nucleus | 30.52 | 18.47 |
| CDY20754 | Canola | nucleus | 32.63 | 17.51 |
| CDY28645 | Canola | nucleus | 30.05 | 16.14 |
| CDY17352 | Canola | extracellular, vacuole | 30.52 | 15.7 |
| CDX97358 | Canola | nucleus | 31.69 | 11.13 |
Protein Annotations
| EnsemblPlants:CDX77921 | EnsemblPlantsGene:GSBRNA2T00129162001 | Gene3D:1.10.10.60 | GO:A0A078CL38 | InterPro:DEK_C | ncoils:Coil |
| PANTHER:PTHR13468 | PFAM:PF08766 | ProteinID:CDX77921 | ProteinID:CDX77921.1 | SEG:seg | SUPFAM:SSF109715 |
| UniParc:UPI0004EECB32 | MapMan:35.2 | : | : | : | : |
Description
BnaC03g52980D
Coordinates
chrLK031813:+:2165054..2168283
Molecular Weight (calculated)
47800.6 Da
IEP (calculated)
10.187
GRAVY (calculated)
-1.189
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MATETEAVES PVKKDGVVAN SVKETEKKEA PVSDDGDSEG EKTEKENESP VTPVTERPKR TIKKVEPHIL HTPSSRSSRS KPVSVQQGRG TQLKEIPNVA
101: YKLSKRKPDD NLFLLHTILY GKKGKVQTLK RNIGLFSGFV WSEQEEEKQR ARTKEKIEKC IKDKLIDFCD VLDIPINKSN VKKEELVVSV LEFLLCPKAT
201: RDVVLTDPEK ETKKRKKSTA KNVTSGESSD VPAKRRRQTK ESGKKQDQPS KSEDTETEDE KDKAEEKKST SKKNSSKRTK KEKPAAEEEK SLKGSARSGR
301: KSSLKVVKST SSSSKKQKVD KDDSSKEKGK KQTSKPQAKG SKDQGKASKK GNKREPTRKE MHVVVAKILK EVDFNTATLS DILRKLGIHF GVDLMHRKTE
401: VKDIITDAID EMSVDDEREE NTEDEG
101: YKLSKRKPDD NLFLLHTILY GKKGKVQTLK RNIGLFSGFV WSEQEEEKQR ARTKEKIEKC IKDKLIDFCD VLDIPINKSN VKKEELVVSV LEFLLCPKAT
201: RDVVLTDPEK ETKKRKKSTA KNVTSGESSD VPAKRRRQTK ESGKKQDQPS KSEDTETEDE KDKAEEKKST SKKNSSKRTK KEKPAAEEEK SLKGSARSGR
301: KSSLKVVKST SSSSKKQKVD KDDSSKEKGK KQTSKPQAKG SKDQGKASKK GNKREPTRKE MHVVVAKILK EVDFNTATLS DILRKLGIHF GVDLMHRKTE
401: VKDIITDAID EMSVDDEREE NTEDEG
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.