Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01993 | Sorghum | nucleus | 54.07 | 61.54 |
| Os01t0924900-01 | Rice | nucleus | 47.66 | 54.03 |
| TraesCS3A01G436900.1 | Wheat | nucleus | 42.11 | 52.03 |
| TraesCS3D01G429200.1 | Wheat | nucleus | 43.85 | 51.42 |
| TraesCS3B01G471100.1 | Wheat | nucleus | 40.9 | 47.97 |
| HORVU3Hr1G095450.1 | Barley | plasma membrane | 42.11 | 42.71 |
| GSMUA_Achr10P... | Banana | nucleus | 36.05 | 37.41 |
| GSMUA_Achr11P... | Banana | nucleus | 34.84 | 36.88 |
| KRH41110 | Soybean | nucleus | 29.98 | 35.52 |
| CDY37915 | Canola | nucleus | 26.0 | 35.46 |
| Bra019559.1-P | Field mustard | nucleus | 25.65 | 35.41 |
| CDX77921 | Canola | nucleus | 26.0 | 35.21 |
| Bra029213.1-P | Field mustard | nucleus | 17.16 | 35.11 |
| CDY39861 | Canola | nucleus | 21.84 | 34.9 |
| KRH63796 | Soybean | nucleus | 32.24 | 34.77 |
| AT3G48710.1 | Thale cress | nucleus | 27.73 | 34.63 |
| KRH54152 | Soybean | nucleus | 32.93 | 34.61 |
| CDY05865 | Canola | plastid | 18.54 | 33.44 |
| Bra038644.1-P | Field mustard | nucleus | 28.08 | 33.06 |
| VIT_17s0000g00960.t01 | Wine grape | nucleus | 32.58 | 32.98 |
| Solyc03g097490.2.1 | Tomato | nucleus | 30.5 | 32.71 |
| CDY41517 | Canola | nucleus | 27.38 | 32.24 |
| KRH59791 | Soybean | nucleus | 29.29 | 32.13 |
| CDY62886 | Canola | nucleus | 27.04 | 32.1 |
| CDY69625 | Canola | nucleus | 16.12 | 31.85 |
| PGSC0003DMT400081181 | Potato | nucleus | 29.64 | 31.38 |
| Solyc06g072660.2.1 | Tomato | nucleus | 28.08 | 30.86 |
| AT5G63550.2 | Thale cress | nucleus | 28.25 | 30.7 |
| Bra035837.1-P | Field mustard | nucleus | 26.86 | 28.23 |
| CDY16716 | Canola | nucleus | 26.69 | 27.7 |
| PGSC0003DMT400069255 | Potato | nucleus | 23.57 | 27.47 |
| CDX81185 | Canola | nucleus | 25.82 | 26.61 |
| Zm00001d013757_P010 | Maize | nucleus | 22.7 | 20.06 |
| Zm00001d033159_P001 | Maize | nucleus | 13.34 | 17.23 |
Protein Annotations
| EnsemblPlants:Zm00001d042302_P002 | EnsemblPlants:Zm00001d042302_T002 | EnsemblPlantsGene:Zm00001d042302 | EntrezGene:103650830 | Gene3D:1.10.10.60 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:DEK_C | ncoils:Coil | PFAM:PF08766 | ProteinID:ONM34977.1 |
| ProteinID:ONM34979.1 | SEG:seg | SUPFAM:SSF109715 | TMHMM:TMhelix | UniParc:UPI0008427B1F | UniProt:A0A1D6N2N9 |
| MapMan:35.2 | : | : | : | : | : |
Description
DEK domain-containing chromatin associated protein
Coordinates
chr3:+:159923558..159930405
Molecular Weight (calculated)
63267.1 Da
IEP (calculated)
9.431
GRAVY (calculated)
-1.068
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MASADAAKPA SPPAADPPVD DPMDADPAPP AGEEEQATPQ KQQPEKKRGG RRKKGEAAEK TPPSSKKSAG PTVERPSRER KTVERYAELA PRATPAKKSP
101: AILQGSGTKL KDIPNGRHQW RVVSAGNGGV LVLCWHGREA CWSCVGEEGR KGEKRIALDK RKHLTSTSFF FIGALLYVRF LVCIIVCAIP VSFKLSKRKV
201: DENLQSLHTV LYGRKSNNHF LKRNISQFSG FVWTDNQEKQ RNRIKEKLEK FNKEKLLDFC EILDVIVKVT MKKEEVSAKL LEFLESPCVT RDVVLTDKKK
301: GKKRGRKSKV GRETTAEGAS TEKKRKRAHK QAAEDGKEND GEDDDPTGSE DASTGEEADG DSEANDHALS DDEHDEPASK KKSSDVKQKK ETGSDAKEKD
401: APGKKGSTKR ASKPSQNSKN EPEVEIKKVG KREKSSKETD VSPDSNKSNK KISKSKKGDG KETQNNKAAR SSNKSKGKVK GGSVAGTAPT TEQLHAVVSG
501: ILKEVDFNTA TLADILRQLG THFEMDLMDR KAEVKRIIED VINSMSDDEG EEGSEDEAED DGKADNLKSE PDGGEEK
101: AILQGSGTKL KDIPNGRHQW RVVSAGNGGV LVLCWHGREA CWSCVGEEGR KGEKRIALDK RKHLTSTSFF FIGALLYVRF LVCIIVCAIP VSFKLSKRKV
201: DENLQSLHTV LYGRKSNNHF LKRNISQFSG FVWTDNQEKQ RNRIKEKLEK FNKEKLLDFC EILDVIVKVT MKKEEVSAKL LEFLESPCVT RDVVLTDKKK
301: GKKRGRKSKV GRETTAEGAS TEKKRKRAHK QAAEDGKEND GEDDDPTGSE DASTGEEADG DSEANDHALS DDEHDEPASK KKSSDVKQKK ETGSDAKEKD
401: APGKKGSTKR ASKPSQNSKN EPEVEIKKVG KREKSSKETD VSPDSNKSNK KISKSKKGDG KETQNNKAAR SSNKSKGKVK GGSVAGTAPT TEQLHAVVSG
501: ILKEVDFNTA TLADILRQLG THFEMDLMDR KAEVKRIIED VINSMSDDEG EEGSEDEAED DGKADNLKSE PDGGEEK
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.