Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37915 | Canola | nucleus | 89.71 | 88.65 |
| AT3G48710.1 | Thale cress | nucleus | 69.38 | 62.77 |
| Bra029213.1-P | Field mustard | nucleus | 28.71 | 42.55 |
| Bra038644.1-P | Field mustard | nucleus | 49.28 | 42.04 |
| Bra035837.1-P | Field mustard | nucleus | 53.11 | 40.44 |
| KRH41110 | Soybean | nucleus | 42.82 | 36.76 |
| KRH63796 | Soybean | nucleus | 46.89 | 36.64 |
| KRH59791 | Soybean | nucleus | 45.45 | 36.12 |
| KRH54152 | Soybean | nucleus | 46.65 | 35.52 |
| VIT_17s0000g00960.t01 | Wine grape | nucleus | 44.74 | 32.81 |
| TraesCS3A01G436900.1 | Wheat | nucleus | 36.6 | 32.76 |
| Solyc06g072660.2.1 | Tomato | nucleus | 41.15 | 32.76 |
| TraesCS3D01G429200.1 | Wheat | nucleus | 38.52 | 32.72 |
| PGSC0003DMT400081181 | Potato | nucleus | 42.11 | 32.29 |
| Solyc03g097490.2.1 | Tomato | nucleus | 41.39 | 32.16 |
| TraesCS3B01G471100.1 | Wheat | nucleus | 37.08 | 31.5 |
| EES01993 | Sorghum | nucleus | 38.04 | 31.36 |
| Os01t0924900-01 | Rice | nucleus | 36.6 | 30.06 |
| PGSC0003DMT400069255 | Potato | nucleus | 34.93 | 29.49 |
| GSMUA_Achr11P... | Banana | nucleus | 37.8 | 28.99 |
| GSMUA_Achr10P... | Banana | nucleus | 37.56 | 28.24 |
| HORVU3Hr1G095450.1 | Barley | plasma membrane | 35.89 | 26.36 |
| Zm00001d042302_P002 | Maize | nucleus | 35.41 | 25.65 |
| Bra027748.1-P | Field mustard | nucleus | 9.09 | 21.59 |
| Bra035582.1-P | Field mustard | nucleus | 32.06 | 16.88 |
| Bra026415.1-P | Field mustard | nucleus | 31.58 | 15.81 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 30.62 | 14.8 |
| Bra010432.1-P | Field mustard | nucleus | 30.86 | 11.41 |
Protein Annotations
| EnsemblPlants:Bra019559.1 | EnsemblPlants:Bra019559.1-P | EnsemblPlantsGene:Bra019559 | Gene3D:1.10.10.60 | InterPro:DEK_C | PANTHER:PTHR13468 |
| PFAM:PF08766 | SEG:seg | SUPFAM:SSF109715 | UniParc:UPI000253EFF3 | UniProt:M4DSR6 | MapMan:35.2 |
Description
AT3G48710 (E=6e-059) | EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63550.2); Has 48226 Blast hits to 25734 proteins in 1103 species: Archae - 54; Bacteria - 6881; Metazoa - 21026; Fungi - 4604; Plants - 1514; Viruses - 306; Other Eukaryotes - 13841 (source: NCBI BLink).
Coordinates
chrA06:-:12218113..12220783
Molecular Weight (calculated)
46771.3 Da
IEP (calculated)
10.234
GRAVY (calculated)
-1.167
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MATETKAVES PVKKDGVVAN SAKETEKKEA PVSDDGDSEE ENESPVSERP KRIIKKVEPH ILHTPSSRSS RSKPVSVLQG RGTQLKEIPN VAYKLSKRKP
101: DDNLFLLHTI LYGKKGKVQT LKRNIGLFSG FVWSEQGEEK QRARTKEKIE KCIKDKLIDF CDVLDIPINK SNVKKEELVV SVLEFLLCPK ATRDIVLSDP
201: EKETKKRKKS TAKNVTSGES SDVPAKRRRQ TKESGKKQDQ PSKSEDTETE DEKDKAEEKK STNKKNSSKR TKKEKPAAEE EKSLKGSARA GRKSSLKVVT
301: STSSSSKKQK VDKDDSSKEK GKKQTSKPQA KGSKDQGKAS KKGNKREPTR KEMHVVVAKI LKEVDFNTAT LSDILRKLGS HFGVDLMHRK TEVKDIITDA
401: IDEMSADDER EENTEDEG
101: DDNLFLLHTI LYGKKGKVQT LKRNIGLFSG FVWSEQGEEK QRARTKEKIE KCIKDKLIDF CDVLDIPINK SNVKKEELVV SVLEFLLCPK ATRDIVLSDP
201: EKETKKRKKS TAKNVTSGES SDVPAKRRRQ TKESGKKQDQ PSKSEDTETE DEKDKAEEKK STNKKNSSKR TKKEKPAAEE EKSLKGSARA GRKSSLKVVT
301: STSSSSKKQK VDKDDSSKEK GKKQTSKPQA KGSKDQGKAS KKGNKREPTR KEMHVVVAKI LKEVDFNTAT LSDILRKLGS HFGVDLMHRK TEVKDIITDA
401: IDEMSADDER EENTEDEG
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.