CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042302_P002	Maize	nucleus	61.54	54.07
Os01t0924900-01	Rice	nucleus	54.04	53.83
TraesCS3D01G429200.1	Wheat	nucleus	48.13	49.59
TraesCS3B01G471100.1	Wheat	nucleus	47.53	48.98
TraesCS3A01G436900.1	Wheat	nucleus	44.97	48.82
HORVU3Hr1G095450.1	Barley	plasma membrane	48.32	43.06
CDY37915	Canola	nucleus	32.15	38.53
Bra019559.1-P	Field mustard	nucleus	31.36	38.04
GSMUA_Achr10P...	Banana	nucleus	41.62	37.95
KRH41110	Soybean	nucleus	36.09	37.58
CDX77921	Canola	nucleus	31.56	37.56
AT3G48710.1	Thale cress	nucleus	34.12	37.45
GSMUA_Achr11P...	Banana	nucleus	39.05	36.33
Solyc03g097490.2.1	Tomato	nucleus	38.26	36.06
Bra029213.1-P	Field mustard	nucleus	19.92	35.82
PGSC0003DMT400081181	Potato	nucleus	38.46	35.78
CDY39861	Canola	nucleus	25.44	35.73
KRH54152	Soybean	nucleus	38.66	35.7
CDY05865	Canola	plastid	22.49	35.62
KRH63796	Soybean	nucleus	37.48	35.51
CDY41517	Canola	nucleus	33.92	35.1
Bra038644.1-P	Field mustard	nucleus	33.73	34.9
KRH59791	Soybean	nucleus	35.9	34.6
CDY62886	Canola	nucleus	32.35	33.74
Solyc06g072660.2.1	Tomato	nucleus	34.52	33.33
CDY69625	Canola	nucleus	19.13	33.22
AT5G63550.2	Thale cress	nucleus	34.32	32.77
VIT_17s0000g00960.t01	Wine grape	nucleus	36.69	32.63
Bra035837.1-P	Field mustard	nucleus	33.73	31.15
CDX81185	Canola	nucleus	33.92	30.71
PGSC0003DMT400069255	Potato	nucleus	29.78	30.51
CDY16716	Canola	nucleus	32.74	29.86
EER91265	Sorghum	nucleus	26.43	20.78
OQU91413	Sorghum	nucleus	22.88	8.59

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.2	EntrezGene:8079820	UniProt:C5XGD7	ncoils:Coil	InterPro:DEK_C
EnsemblPlants:EES01993	ProteinID:EES01993	ProteinID:EES01993.1	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006338	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0042393	GO:GO:2000779	PFAM:PF08766	PANTHER:PTHR13468	EnsemblPlantsGene:SORBI_3003G408800
SUPFAM:SSF109715	unigene:Sbi.7530	UniParc:UPI0001A84AAE	RefSeq:XP_002456873.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:71646982..71653480

Molecular Weight (calculated)

55042.8 Da

IEP (calculated)

9.584

GRAVY (calculated)

-1.248

Length

507 amino acids

Sequence
(BLAST)

001: MASADAAKPA SPPAADPPAD DPMDADPAPP AVEEKEKEEA TPQKQPEKKR GGRRKKGEAA AAEKKTPPSK KSAGPTVERP SRERKTVERY AELAPRATPA
101: KKSPAIVQGS GTKLKDIPNV SFKLSKRKVD ENLQSLHTVL YGRKSNNHFL KRNISQFSGF VWTDNQEKQR NKIKEKLEKF NKEKLLDFCE VLDINVKVTT
201: KKEEVSAKLL EFLESPCVTR DVVLTDKKKG KKRGRKSKAT SEGASAEKKR KRVQKQAAED GKENDDADDA DPAGSEDAST GEEADGDSEA NDHAVSDDEL
301: DEPPAKKKST DAKQVKKETG SDAKEKDTPG KKGSTKPAKG ASKASQNSKN EPDAEVKKVG KRAKSSKESV VSPDSNKSNK KVSKSKKDDG KESQNNKAAR
401: SSNKNKGKGK GGAAAGTAPT TEQLHAVVSS ILKEVDFNTA TLADILRQLG THFEMDLMDR KAEVKRIIEE VINSMSDDEG EEDSEDEAED NGKVEKSKSD
501: PDGGEEK

Best Arabidopsis Sequence Match ( AT3G48710.1 )
(BLAST)

001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD

Arabidopsis Description

At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.