Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G436900.1 | Wheat | nucleus | 80.08 | 84.37 |
| TraesCS3B01G471100.1 | Wheat | nucleus | 83.74 | 83.74 |
| HORVU3Hr1G095450.1 | Barley | plasma membrane | 80.69 | 69.77 |
| Os01t0924900-01 | Rice | nucleus | 60.57 | 58.55 |
| EES01993 | Sorghum | nucleus | 49.59 | 48.13 |
| Zm00001d042302_P002 | Maize | nucleus | 51.42 | 43.85 |
| CDX77921 | Canola | nucleus | 33.54 | 38.73 |
| Bra019559.1-P | Field mustard | nucleus | 32.72 | 38.52 |
| CDY37915 | Canola | nucleus | 32.93 | 38.3 |
| GSMUA_Achr11P... | Banana | nucleus | 41.06 | 37.06 |
| GSMUA_Achr10P... | Banana | nucleus | 41.46 | 36.69 |
| Bra029213.1-P | Field mustard | nucleus | 20.93 | 36.52 |
| AT3G48710.1 | Thale cress | nucleus | 33.94 | 36.15 |
| CDY39861 | Canola | nucleus | 26.02 | 35.46 |
| CDY69625 | Canola | nucleus | 20.93 | 35.27 |
| KRH63796 | Soybean | nucleus | 38.01 | 34.95 |
| KRH41110 | Soybean | nucleus | 34.35 | 34.7 |
| CDY05865 | Canola | plastid | 22.36 | 34.38 |
| PGSC0003DMT400081181 | Potato | nucleus | 38.01 | 34.31 |
| AT5G63550.2 | Thale cress | nucleus | 36.99 | 34.27 |
| Solyc03g097490.2.1 | Tomato | nucleus | 37.4 | 34.2 |
| CDY62886 | Canola | nucleus | 33.74 | 34.16 |
| Bra038644.1-P | Field mustard | nucleus | 33.33 | 33.47 |
| VIT_17s0000g00960.t01 | Wine grape | nucleus | 38.41 | 33.16 |
| KRH59791 | Soybean | nucleus | 35.37 | 33.08 |
| CDY41517 | Canola | nucleus | 32.93 | 33.06 |
| KRH54152 | Soybean | nucleus | 36.59 | 32.79 |
| Solyc06g072660.2.1 | Tomato | nucleus | 34.76 | 32.57 |
| Bra035837.1-P | Field mustard | nucleus | 34.76 | 31.15 |
| CDX81185 | Canola | nucleus | 35.37 | 31.07 |
| CDY16716 | Canola | nucleus | 33.94 | 30.04 |
| PGSC0003DMT400069255 | Potato | nucleus | 30.08 | 29.9 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 26.42 | 12.97 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G429200.1 | EnsemblPlantsGene:TraesCS3D01G429200 | Gene3D:1.10.10.60 | InterPro:DEK_C | ncoils:Coil | PANTHER:PTHR13468 |
| PFAM:PF08766 | SEG:seg | SUPFAM:SSF109715 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr3D:+:543872419..543878904
Molecular Weight (calculated)
54730.7 Da
IEP (calculated)
9.094
GRAVY (calculated)
-1.343
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAAKPADP APADPPADDP MDADAEAEEH EDEAESEEEA EAQPQKKRGR RKRVPREPAT PATGRPSRER KTVERYAELT PRSTPAKKSA AILQGSGTKL
101: KEIPNVFFKL SKRKADDNLQ SLHTLLFGRK SNVHFLKRNL AQFSGFVWTD NPEKQRNRIK ERLDKMNKEK LLDFCDILDV QAKHTLKKEE VSAKLLEFLE
201: SPCITRDVVI SDVKKGKKRR RRSKGTSQAT AEGASGEKKK RKSRKQKVEA ENENDDEDDA GPAGSEDSSM GESDEDSEVK EETKSDEEPE ATPVKKKSTD
301: GKQGKKEAGS KAKEKDASVK KTPTKSVKSV SKPNVKLESK KAAKKTPKNS TKESSTPVEK AKKKVAKPKK DDGKESQNNS KARKKQGAKA SGENKGKGKV
401: APTTKQLHGV VSNILKEVDF NTATLADILR KLGDHFDMDL MDRKSEVKRI IEEVINSMSD DEGEEENEEE DAEENGKKEE DSKEDPDEEE EK
101: KEIPNVFFKL SKRKADDNLQ SLHTLLFGRK SNVHFLKRNL AQFSGFVWTD NPEKQRNRIK ERLDKMNKEK LLDFCDILDV QAKHTLKKEE VSAKLLEFLE
201: SPCITRDVVI SDVKKGKKRR RRSKGTSQAT AEGASGEKKK RKSRKQKVEA ENENDDEDDA GPAGSEDSSM GESDEDSEVK EETKSDEEPE ATPVKKKSTD
301: GKQGKKEAGS KAKEKDASVK KTPTKSVKSV SKPNVKLESK KAAKKTPKNS TKESSTPVEK AKKKVAKPKK DDGKESQNNS KARKKQGAKA SGENKGKGKV
401: APTTKQLHGV VSNILKEVDF NTATLADILR KLGDHFDMDL MDRKSEVKRI IEEVINSMSD DEGEEENEEE DAEENGKKEE DSKEDPDEEE EK
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.