Factsheet for Solyc03g097490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081181	Potato	nucleus	73.61	72.66
Solyc06g072660.2.1	Tomato	nucleus	49.81	51.05
KRH41110	Soybean	nucleus	42.38	46.82
KRH63796	Soybean	nucleus	44.42	44.67
AT3G48710.1	Thale cress	nucleus	38.1	44.37
KRH54152	Soybean	nucleus	44.98	44.08
KRH59791	Soybean	nucleus	42.94	43.92
VIT_17s0000g00960.t01	Wine grape	nucleus	45.17	42.63
CDX77921	Canola	nucleus	33.27	42.02
Bra029213.1-P	Field mustard	nucleus	21.75	41.49
CDY69625	Canola	nucleus	22.49	41.44
Bra019559.1-P	Field mustard	nucleus	32.16	41.39
Bra038644.1-P	Field mustard	nucleus	37.55	41.22
CDY37915	Canola	nucleus	32.34	41.13
CDY39861	Canola	nucleus	27.32	40.72
CDY41517	Canola	nucleus	35.87	39.39
CDY62886	Canola	nucleus	35.5	39.3
EES01993	Sorghum	nucleus	36.06	38.26
TraesCS3A01G436900.1	Wheat	nucleus	33.09	38.12
AT5G63550.2	Thale cress	nucleus	36.99	37.48
TraesCS3D01G429200.1	Wheat	nucleus	34.2	37.4
TraesCS3B01G471100.1	Wheat	nucleus	34.01	37.2
CDY05865	Canola	plastid	22.12	37.19
Os01t0924900-01	Rice	nucleus	34.94	36.94
Bra035837.1-P	Field mustard	nucleus	37.17	36.43
GSMUA_Achr11P...	Banana	nucleus	36.8	36.33
CDX81185	Canola	nucleus	37.55	36.07
GSMUA_Achr10P...	Banana	nucleus	36.99	35.79
CDY16716	Canola	nucleus	36.8	35.61
HORVU3Hr1G095450.1	Barley	plasma membrane	34.2	32.34
Solyc10g006000.2.1	Tomato	nucleus	32.34	31.41
Zm00001d042302_P002	Maize	nucleus	32.71	30.5
Solyc07g065490.2.1	Tomato	nucleus	34.76	29.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.2	ncoils:Coil	InterPro:DEK_C	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006338	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0042393	GO:GO:2000779	UniProt:K4BJG6	PFAM:PF08766
PANTHER:PTHR13468	SUPFAM:SSF109715	EnsemblPlantsGene:Solyc03g097490.2	EnsemblPlants:Solyc03g097490.2.1	UniParc:UPI0002768388	SEG:seg

Description

No Description!

Coordinates

chr3:+:59826008..59831652

Molecular Weight (calculated)

59784.6 Da

IEP (calculated)

5.205

GRAVY (calculated)

-1.438

Length

538 amino acids

Sequence
(BLAST)

001: MASEKETLDD KKPEEVIEEQ QPKDNDKEKE EESMQVDKKD VESEEEKEES EEEDEEKEEE KPVKKKGKSR GESTEEPVTP ITRPTRERKT VERYSESSEA
101: RGSTPKPLSI RKGSGTQLKD IPNVAYKLSK RKPDDNLQIL HNILFGKKSK VHSLKKNIGQ FSGFVWVEDE EKQRRKTKEK LDKCVKEKLL DFCDVLNIPV
201: SRTSAKKDEL TVKLLEFLES PHSTTDSLLA EKEQKGKKQK RKGSASKSAG SLDKSVKKHQ KSEVGVKRKR SAKTEEEEAN DEQPSDSGDD SDNDDEAPKE
301: GSDQEESGSE KSEKQEEEEE VEEKPKKNKS GEKVNSKKSV KKDSGSKAAE KTKATEKGSP AKSLKSSSTS TPSSSVSKKG ASAADSTSKA KKEKAEKKSK
401: KEEIEPVKEN SSSKKQSSKS TSKVSEKGKG KSVKKAKAEP SKEELHAVVS IILKKVDFNT ATLSDIIRQL GSHFDLDLMH RKAEVKAIIT EVINNMSEEE
501: DEDESEGDDA EKSEGESDAE KPEGDDDAEK SDGADSDS

Best Arabidopsis Sequence Match ( AT5G63550.2 )
(BLAST)

001: MATETLDEKT PEVNSPAKEE IDVVPKEEKE VEKEKVDSPR IGEAEEEKKE DEEEGEAKEG ELGEKDKEDD VESEEEEEEE EGSGSKKSSE KETVTPTSER
101: PTRERKKVER FSLSTPMRAP PSKSVSIEKG RGTPLREIPN VAHKLSKRKA DDNLMLLHTI LFGKKAKAQM VKRNIGQFSG FAWSEKEEEK QRARIKEKID
201: KCVKEKLIVF CDVLDIPISR SNVKKEELAV KVLEFLESPK ETRDVIIADQ EKQAKKRKST PKRGKSGESS DTPAKRKRQT KKRDLPSDTE EGKDEGDADS
301: EGTNDPHEED DAAPEEESDH EKTDTDDEKD EVEVEKPSKK KSSSKKTVEE SSGSKGKDKQ PSAKGSARSG EKSSKQIAKS TSSPAKKQKV DHVESSKEKS
401: KKQPSKPQAK GSKEKGKATK KGKAKAEPTR KEMLEVVSKI LKEVDFNTAT LSDILQKLSD HFGVELSHRK PEVKDVITEA INAMTDDEEE DEEEEAEAGS
501: DKEKEEVKGE EEEEKAEAES DKEKEKEEPK D

Arabidopsis Description

DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:Q9FFQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.