CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63796	Soybean	nucleus	74.13	76.07
KRH59791	Soybean	nucleus	52.82	55.13
KRH41110	Soybean	nucleus	48.82	55.03
CDX77921	Canola	nucleus	36.25	46.71
Bra019559.1-P	Field mustard	nucleus	35.52	46.65
Bra029213.1-P	Field mustard	nucleus	23.68	46.1
CDY37915	Canola	nucleus	34.97	45.39
AT3G48710.1	Thale cress	nucleus	38.07	45.24
Solyc03g097490.2.1	Tomato	nucleus	44.08	44.98
VIT_17s0000g00960.t01	Wine grape	nucleus	46.27	44.56
PGSC0003DMT400081181	Potato	nucleus	42.99	43.3
CDY69625	Canola	nucleus	22.95	43.15
Solyc06g072660.2.1	Tomato	nucleus	41.17	43.05
CDY05865	Canola	plastid	23.68	40.62
CDY39861	Canola	nucleus	26.41	40.17
AT5G63550.2	Thale cress	nucleus	38.62	39.92
PGSC0003DMT400069255	Potato	nucleus	35.34	39.19
CDY62886	Canola	nucleus	34.61	39.09
CDY41517	Canola	nucleus	34.61	38.78
EES01993	Sorghum	nucleus	35.7	38.66
Bra038644.1-P	Field mustard	nucleus	34.06	38.16
TraesCS3A01G436900.1	Wheat	nucleus	32.24	37.9
Os01t0924900-01	Rice	nucleus	34.79	37.52
GSMUA_Achr11P...	Banana	nucleus	37.16	37.43
TraesCS3B01G471100.1	Wheat	nucleus	33.52	37.4
Bra035837.1-P	Field mustard	nucleus	36.98	36.98
CDY16716	Canola	nucleus	37.16	36.69
TraesCS3D01G429200.1	Wheat	nucleus	32.79	36.59
CDX81185	Canola	nucleus	36.79	36.07
GSMUA_Achr10P...	Banana	nucleus	36.07	35.61
Zm00001d042302_P002	Maize	nucleus	34.61	32.93
HORVU3Hr1G095450.1	Barley	plasma membrane	32.79	31.63
KRG98507	Soybean	nucleus	33.52	25.03
KRH46360	Soybean	nucleus	32.42	24.05
KRG98502	Soybean	nucleus	29.87	22.47
KRH46364	Soybean	nucleus	31.88	21.69

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100813123	MapMan:35.2	EMBL:ACUP02003499	ncoils:Coil	InterPro:DEK_C
EnsemblPlantsGene:GLYMA_06G167700	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006338
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0042393
GO:GO:2000779	UniProt:I1KC06	EnsemblPlants:KRH54152	ProteinID:KRH54152	ProteinID:KRH54152.1	PFAM:PF08766
PANTHER:PTHR13468	SUPFAM:SSF109715	UniParc:UPI000233A765	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:13991522..13997396

Molecular Weight (calculated)

60865.1 Da

IEP (calculated)

6.166

GRAVY (calculated)

-1.372

Length

549 amino acids

Sequence
(BLAST)

001: MASEALEDNK PPLQDDNHAK SEIPEKDASS DAVAAKSENA NAGDKDGGAA GNQEVEEEAD AAEEKKEEID EDGEEKDEQE EKEEEDEAEE KEKEKAKGKG
101: KRRRSKKDPV TPAPSERPTR ERKTVERFSV PSPAKSARSS ASKGLIIEKG RGTQLKDIPN VAFKLSKRKP DDNLHMLHTL LFGKKTKAHN LKRNIGQFSG
201: YVWTENEDKQ RAKIKEKIDK FVKEKLLDFC DVLNIQVNKT NVKKEELSAK LLEYLESPHA TTDILLADKE QKGKKRTRKS FPSKSPGEAS TETPAKKQKQ
301: TSQSGKKQKQ SSDDDEDDKA ELSDAKGVSQ EDEDVAVPNN ESDDEESRSE EEEEKSKSRK RTSKKAVKES SVSKADRTSS VKKTPVKDAK SIEKTKKKPT
401: SKKGVAEHDS ASASVSKSKQ PASKKQKTAS EKQDTKGKAA SKKRTDKSSK ALVKDQGKSK SNKKAKAEPT KQDMHAVVVD ILKEVDFNTA TLSDILRQLG
501: THFGMDLMHR KAEVKDIITD VINNMSDEEE AENDGDTDKD DDGDDDDDA

Best Arabidopsis Sequence Match ( AT3G48710.1 )
(BLAST)

001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD

Arabidopsis Description

At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.