Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94304 | Canola | nucleus | 50.99 | 82.15 |
| Bra026415.1-P | Field mustard | nucleus | 91.48 | 77.13 |
| AT4G26630.1 | Thale cress | nucleus | 56.39 | 52.03 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 36.79 | 43.24 |
| CDY06563 | Canola | nucleus | 40.77 | 41.78 |
| CDY28645 | Canola | nucleus | 45.17 | 40.1 |
| CDY20754 | Canola | nucleus | 44.32 | 39.29 |
| CDY17352 | Canola | extracellular, vacuole | 45.17 | 38.41 |
| KRG98507 | Soybean | nucleus | 38.49 | 36.87 |
| Solyc07g065490.2.1 | Tomato | nucleus | 31.53 | 35.02 |
| KRH46360 | Soybean | nucleus | 36.79 | 35.0 |
| KRG98502 | Soybean | nucleus | 36.22 | 34.93 |
| CDY69625 | Canola | nucleus | 14.2 | 34.25 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 32.95 | 33.97 |
| CDX97358 | Canola | nucleus | 57.53 | 33.39 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 16.48 | 33.33 |
| Solyc10g006000.2.1 | Tomato | nucleus | 25.57 | 32.49 |
| KRH46364 | Soybean | nucleus | 36.93 | 32.22 |
| CDX77921 | Canola | nucleus | 18.47 | 30.52 |
| CDY37915 | Canola | nucleus | 18.32 | 30.5 |
| CDY62886 | Canola | nucleus | 19.32 | 27.98 |
| EER91265 | Sorghum | nucleus | 24.15 | 26.36 |
| CDY41517 | Canola | nucleus | 18.18 | 26.12 |
| CDY39861 | Canola | nucleus | 13.21 | 25.76 |
| Os03t0596900-01 | Rice | nucleus | 25.71 | 25.75 |
| CDY05865 | Canola | plastid | 11.51 | 25.31 |
| CDX81185 | Canola | nucleus | 19.89 | 25.0 |
| Zm00001d013757_P010 | Maize | nucleus | 22.87 | 24.66 |
| CDY16716 | Canola | nucleus | 19.46 | 24.64 |
| Zm00001d033159_P001 | Maize | nucleus | 15.62 | 24.61 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 9.38 | 20.56 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 23.44 | 16.98 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 22.73 | 16.36 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 23.01 | 16.17 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 22.73 | 16.15 |
| OQU91413 | Sorghum | nucleus | 21.02 | 10.95 |
Protein Annotations
| EnsemblPlants:CDX89318 | EnsemblPlantsGene:GSBRNA2T00149534001 | GO:A0A078DQ22 | ncoils:Coil | PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 |
| ProteinID:CDX89318 | ProteinID:CDX89318.1 | SEG:seg | SUPFAM:SSF109715 | UniParc:UPI0004EDF06C | MapMan:35.2 |
Description
BnaA01g15750D
Coordinates
chrLK031858:+:875827..879819
Molecular Weight (calculated)
78456.2 Da
IEP (calculated)
4.884
GRAVY (calculated)
-1.445
Length
704 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEDSKAAV EPTATKTTSL EKPSEAVAGN KEENAGGKET QEVKKDEEKA EPEKMEIDAE TEKMEEDATV TKDEGHAEAT NMDEDENADG KKKQTDDGVS
101: GGGKVKDTVM KENVESKDSD NVKDDEKQET KDAADHKKAG KESEEDVKDE GEKANGTKQE EEKLVDGDKG TENTENVETV DEDKEVQTVE EDPKVETVDE
201: KEKEDSAKEQ NEEGLVEEEK EVEDMEEDKI EKVEEGTVKD EDGDEKEEIK DEKEDEKAES GDDKEDEKEE SKGSKKRGKG KSSGKKVGEK TKKDAEPKTP
301: FSDRPVRERK SVERLVAVID RDSSKEFHIE KGKGAYLKDI PNVAYKVTRK KSDEILKLLH TILFARRGKA AQIKTNILGF SGFVWHGNEE KAREKIKEKL
401: DKCNKEKLWE FCDVFDIHVS KATTKKEDII TKLIEFLEKP HVKSDVAANE KDKSSTGAKR KRTPKQSSPA AGSSSSKRSA KRKRKSGEGT KATKKILADS
501: EDESEEEKEE EEKEKNAEEE VKNKEEENEN GIPDKSEDEA PQPSESDEKD DSEEHSEEET PKKKRRSKVS AGKKESAGRA RSKKPAVAAK SSPPEKVTQK
601: RSSAKRKKTD DDSDASPKAS SKRKKSEKAT KAPAPSKEKP EVKSAGKGKE KTKGPSDKVL KKAIVEILKR VDFNTATFTD ILKELGMNRL VSLISLWLDS
701: VLCM
101: GGGKVKDTVM KENVESKDSD NVKDDEKQET KDAADHKKAG KESEEDVKDE GEKANGTKQE EEKLVDGDKG TENTENVETV DEDKEVQTVE EDPKVETVDE
201: KEKEDSAKEQ NEEGLVEEEK EVEDMEEDKI EKVEEGTVKD EDGDEKEEIK DEKEDEKAES GDDKEDEKEE SKGSKKRGKG KSSGKKVGEK TKKDAEPKTP
301: FSDRPVRERK SVERLVAVID RDSSKEFHIE KGKGAYLKDI PNVAYKVTRK KSDEILKLLH TILFARRGKA AQIKTNILGF SGFVWHGNEE KAREKIKEKL
401: DKCNKEKLWE FCDVFDIHVS KATTKKEDII TKLIEFLEKP HVKSDVAANE KDKSSTGAKR KRTPKQSSPA AGSSSSKRSA KRKRKSGEGT KATKKILADS
501: EDESEEEKEE EEKEKNAEEE VKNKEEENEN GIPDKSEDEA PQPSESDEKD DSEEHSEEET PKKKRRSKVS AGKKESAGRA RSKKPAVAAK SSPPEKVTQK
601: RSSAKRKKTD DDSDASPKAS SKRKKSEKAT KAPAPSKEKP EVKSAGKGKE KTKGPSDKVL KKAIVEILKR VDFNTATFTD ILKELGMNRL VSLISLWLDS
701: VLCM
001: MGEDTKATIE PTANKTTSLE KPSEAMAGKE NAGGKETQEL AKDEDMAEPD NMEIDAQIKK DDEKAETEDK ESEVKKNEDN AETQKMEEKV EVTKDEGQAE
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:Q9SUA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.