CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030271.1-P	Field mustard	cytosol	96.23	66.06
CDX70764	Canola	cytosol	22.26	40.41
AT5G44220.1	Thale cress	plastid	44.91	40.34
CDX78751	Canola	cytosol	33.58	35.18
CDX90297	Canola	cytosol, nucleus, plastid	26.42	29.17
CDY25598	Canola	cytosol	36.23	23.53
CDX89471	Canola	cytosol	35.85	23.51
CDX76908	Canola	mitochondrion	18.49	23.22
CDY13748	Canola	cytosol, endoplasmic reticulum, nucleus	10.19	17.88
CDY15856	Canola	plastid	7.55	12.12

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078FN31	EnsemblPlants:CDY15855	ProteinID:CDY15855	ProteinID:CDY15855.1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00090203001	InterPro:IPR001810	PFAM:PF00646	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE4AA6	:	:	:

Description

BnaA04g12560DBnaA04g12560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FN31]

Coordinates

chrLK032059:+:129523..130683

Molecular Weight (calculated)

30183.1 Da

IEP (calculated)

10.477

GRAVY (calculated)

-0.035

Length

265 amino acids

Sequence
(BLAST)

001: MEPTPPSLGV RKRRKKTISD LLPIDLVMQI FKRLPVKTLA RLICVSKLCA SIIRSRDFMK VFLTNRHGRL FFTFKRYKDS ILFTASLQTL NPCEASVAMT
101: HPAFDVDAKN CSYLHGLICY ASACASRVLV YNSSTRKLTT LPIFQPGTPV RNHFLGYDGI GGVYKVLCRT GPNPVFQIMT LGDGTYWFHR FVDVNDAGEF
201: VLAPSSVRIR HYVLFYDPKR NSMRKVAVNG IKVPIRYDSN RRFNRPDSCS LLHLFSSQVE SPMFL

Best Arabidopsis Sequence Match ( AT5G44220.1 )
(BLAST)

001: MQRQRANDTV TTFRYNTRSS SRHGISNTLR VVESKTSASS PRVRRWRKKV SDDRRSTNSD LLPMDLIKEI LKRLPAKTLA RFLCVSKLWS SIIRSRDLMK
101: LFLTESSARP GRLFFTFRRK DDCFLFSSEE SSVATYLFTI PASGYTNNCS FVHGLICYGT TAYASQLVVY NSSTRRSITL PEIEARSFVL KHLLGYDPID
201: GVYKVLCMTV PRLVLQKKKK LRNNVTDAGE LILAPISLPD PPYYVIYYDP QRQSTRKVVI RGITEHNCKL LRCKKRHPCI LYYVFSSQVE SLMFM

Arabidopsis Description

Putative F-box protein At5g44220 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.