Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25598 | Canola | cytosol | 89.36 | 88.48 |
| CDY15856 | Canola | plastid | 26.49 | 64.85 |
| CDY13748 | Canola | cytosol, endoplasmic reticulum, nucleus | 23.02 | 61.59 |
| AT2G21930.2 | Thale cress | cytosol | 49.51 | 50.51 |
| CDX76908 | Canola | mitochondrion | 24.75 | 47.39 |
| CDX90297 | Canola | cytosol, nucleus, plastid | 26.49 | 44.58 |
| CDX70764 | Canola | cytosol | 15.1 | 41.78 |
| CDX78751 | Canola | cytosol | 24.01 | 38.34 |
| CDY15855 | Canola | cytosol | 23.51 | 35.85 |
Protein Annotations
| EnsemblPlants:CDX89471 | EnsemblPlantsGene:GSBRNA2T00149733001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-assoc_dom_typ3 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:Gal_Oxase/kelch_b-propeller | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | PFAM:PF08268 |
| ProteinID:CDX89471 | ProteinID:CDX89471.1 | SEG:seg | SUPFAM:SSF50965 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 |
| TMHMM:TMhelix | UniParc:UPI0004EB8FBA | MapMan:35.1 | : | : | : |
Description
BnaC04g34900D
Coordinates
chrLK031859:-:208606..209820
Molecular Weight (calculated)
46396.0 Da
IEP (calculated)
9.440
GRAVY (calculated)
-0.312
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MERQKSKLAK NNNMSDDVRT SGVGSIPLDL IPEILKDLPV KTLAWFLCVS KPWGCIIRNR DFVKFYLIKS STHPQSLIFA FKSRRHSKHF FFSSSQHQDR
101: DESSLSCVAS YHMKCHSQPY TAITPSVHGL ICYGPPSKLM VYNPSTRRSI ALPIIDAHRL RMYHYLGYDP IGGDYKMLCM SRGMHARRGR GLAHKIQVLT
201: LGNGSSWRMI EDCPPPHSPE SPHICIDGVL FYGGYLDTST RLLRKDHVVM SFDVRSEKFG IIKVPSERAT RFTRMTRYNR KLALMFTGYG GFGCGYSGYI
301: ELWVLEDAAR HEWSNKNFVL PRLASRDTLF QVFCAIDDSG EFVLAPETLR APTFYVMYYD PNKNSMRRVD IEGIADKKLQ FWDDDSDRRT ISIFPGHVEN
401: LLFL
101: DESSLSCVAS YHMKCHSQPY TAITPSVHGL ICYGPPSKLM VYNPSTRRSI ALPIIDAHRL RMYHYLGYDP IGGDYKMLCM SRGMHARRGR GLAHKIQVLT
201: LGNGSSWRMI EDCPPPHSPE SPHICIDGVL FYGGYLDTST RLLRKDHVVM SFDVRSEKFG IIKVPSERAT RFTRMTRYNR KLALMFTGYG GFGCGYSGYI
301: ELWVLEDAAR HEWSNKNFVL PRLASRDTLF QVFCAIDDSG EFVLAPETLR APTFYVMYYD PNKNSMRRVD IEGIADKKLQ FWDDDSDRRT ISIFPGHVEN
401: LLFL
001: MEKQRSKKTK ISDDLITCSG NSVQIPFDLI PEILKRLPVK TLARFLSVSK EYTSIIRNRD FMKSYLINSS TRPQSLIFTI AGGGIHCFFS LIDQGESTSS
101: SKPTYLMNCP HLQLKTFAPS VHGLICHGPP STLIVSSPRL IVSNPSTRRS IILPKIDANH ECIYHHMGYD PIDGDYKVLC MMKGMHVYQR RYLAKELQVF
201: TLRKGNSWRM VEDFPPHCLC HEDTPDLCIN GVLYYVAMLD TASNHAVMSF DVRSEKFDLI KGGPDGDLNP KLTRYEGKPA LLFPGSDYRI NLWVIEDAAK
301: HEWSKMSYDV SSTSLIRNPY FHHCVFCTND AGEIVLAPDF VRTKTFVVLY YHPKKNTMRS VVIKGIRDRK IPLWDEASYH RIISVFSGQV DNLMFL
101: SKPTYLMNCP HLQLKTFAPS VHGLICHGPP STLIVSSPRL IVSNPSTRRS IILPKIDANH ECIYHHMGYD PIDGDYKVLC MMKGMHVYQR RYLAKELQVF
201: TLRKGNSWRM VEDFPPHCLC HEDTPDLCIN GVLYYVAMLD TASNHAVMSF DVRSEKFDLI KGGPDGDLNP KLTRYEGKPA LLFPGSDYRI NLWVIEDAAK
301: HEWSKMSYDV SSTSLIRNPY FHHCVFCTND AGEIVLAPDF VRTKTFVVLY YHPKKNTMRS VVIKGIRDRK IPLWDEASYH RIISVFSGQV DNLMFL
Arabidopsis Description
F-box protein At2g21930 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ06]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.