CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	extracellular, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030272.1-P	Field mustard	plastid	99.39	99.39
CDY13748	Canola	cytosol, endoplasmic reticulum, nucleus	40.61	44.37
CDX76908	Canola	mitochondrion	34.55	27.01
CDX89471	Canola	cytosol	64.85	26.49
CDY25598	Canola	cytosol	64.85	26.23
AT2G21930.2	Thale cress	cytosol	42.42	17.68
CDY15855	Canola	cytosol	12.12	7.55
CDX78751	Canola	cytosol	10.91	7.11
CDX90297	Canola	cytosol, nucleus, plastid	9.09	6.25
CDX70764	Canola	cytosol	3.03	3.42

Protein Annotations

EnsemblPlants:CDY15856	EnsemblPlantsGene:GSBRNA2T00090204001	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10
PFAM:PF08268	ProteinID:CDY15856	ProteinID:CDY15856.1	TIGRFAMs:TIGR01640	UniParc:UPI0004EDCA55	UniProt:A0A078FRS8
MapMan:35.1	:	:	:	:	:

Description

BnaA04g12550DBnaA04g12550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRS8]

Coordinates

chrLK032059:+:131680..132177

Molecular Weight (calculated)

18490.4 Da

IEP (calculated)

7.858

GRAVY (calculated)

-0.087

Length

165 amino acids

Sequence
(BLAST)

001: MDLLLSSWCT TLALDGPPPH SPGSRICIDG VLYYGAYLDL DSRKLTKDHA VMSFDVRSKK FDLIKLPQGR ATQFTRMIRY NGKVAIMLSG GFQSYPGRIE
101: LWVLEDAAKH GWSNQNFVLP LLADRNTMCQ VFCVIDDDAG EFVLAPETLR APPFCVLSYD PKKKA

Best Arabidopsis Sequence Match ( AT2G21930.2 )
(BLAST)

001: MEKQRSKKTK ISDDLITCSG NSVQIPFDLI PEILKRLPVK TLARFLSVSK EYTSIIRNRD FMKSYLINSS TRPQSLIFTI AGGGIHCFFS LIDQGESTSS
101: SKPTYLMNCP HLQLKTFAPS VHGLICHGPP STLIVSSPRL IVSNPSTRRS IILPKIDANH ECIYHHMGYD PIDGDYKVLC MMKGMHVYQR RYLAKELQVF
201: TLRKGNSWRM VEDFPPHCLC HEDTPDLCIN GVLYYVAMLD TASNHAVMSF DVRSEKFDLI KGGPDGDLNP KLTRYEGKPA LLFPGSDYRI NLWVIEDAAK
301: HEWSKMSYDV SSTSLIRNPY FHHCVFCTND AGEIVLAPDF VRTKTFVVLY YHPKKNTMRS VVIKGIRDRK IPLWDEASYH RIISVFSGQV DNLMFL

Arabidopsis Description

F-box protein At2g21930 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ06]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.