CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78751	Canola	cytosol	73.97	42.69
Bra006409.1-P	Field mustard	cytosol	78.77	31.34
CDX90297	Canola	cytosol, nucleus, plastid	49.32	30.0
CDY15855	Canola	cytosol	40.41	22.26
AT4G38870.1	Thale cress	mitochondrion	50.68	17.37
CDY25598	Canola	cytosol	44.52	15.93
CDX89471	Canola	cytosol	41.78	15.1
CDX76908	Canola	mitochondrion	17.81	12.32
CDY15856	Canola	plastid	3.42	3.03
CDY13748	Canola	cytosol, endoplasmic reticulum, nucleus	0.68	0.66

Protein Annotations

EnsemblPlants:CDX70764	EnsemblPlantsGene:GSBRNA2T00140641001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	PFAM:PF00646
PFscan:PS50181	ProteinID:CDX70764	ProteinID:CDX70764.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI0004EEC2F7	MapMan:35.1	:	:	:	:

Description

BnaC03g08480D

Coordinates

chrLK031791:-:1919588..1920028

Molecular Weight (calculated)

16590.4 Da

IEP (calculated)

10.690

GRAVY (calculated)

0.094

Length

146 amino acids

Sequence
(BLAST)

001: METQRMKLTN VKSDSLPLDL VMEILKRLPV KTLIRFLSVS KLWASTIRSR DFMKLFMDVS LTRPKGLLFL FRHGYCGSAL SSKTHESSSF TAFHASCNSS
101: QWSTQWSTVS PSVHGLICYA QATRLVIYNP CTRRFITLTH TLLLGV

Best Arabidopsis Sequence Match ( AT4G38870.1 )
(BLAST)

001: MKTLGFSPKQ KFCARRQTQR WLPEGDRSSS FTPSTMETQR KKFTKVSVNS ELLPVDLIME ILKKLSLKPL IRFLCVSKLW ASIIRDPYFM KLFLNESLKR
101: PKSLVFVFRA QSLGSIFSSV HLKSTREISS SSSSSSASSI TYHVTCYTQQ RMTISPSVHG LICYGPPSSL VIYNPCTRRS ITLPKIKAGR RAINQYIGYD
201: PLDGNYKVVC ITRGMPMLRN RRGLAEEIQV LTLGTRDSSW RMIHDIIPPH SPVSEELCIN GVLYYRAFIG TKLNESAIMS FDVRSEKFDL IKVPCNFRSF
301: SKLAKYEGKL AVIFYEKKTS GIIGLWILED ASNGEWSKKT FALPNLAASS TNSRILKLQK FRTTDADTCE IIFTPSYAHS SLSSAIYCDL KENKVRKFVK
401: EGWTENYLPC NADSVSSTQV ENLMFL

Arabidopsis Description

Putative F-box protein At4g38870 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0J4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.