Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70764 | Canola | cytosol | 42.69 | 73.97 |
| Bra006410.1-P | Field mustard | cytosol | 92.89 | 62.5 |
| CDX90297 | Canola | cytosol, nucleus, plastid | 33.99 | 35.83 |
| CDY15855 | Canola | cytosol | 35.18 | 33.58 |
| AT4G38870.1 | Thale cress | mitochondrion | 43.08 | 25.59 |
| CDY25598 | Canola | cytosol | 38.74 | 24.02 |
| CDX89471 | Canola | cytosol | 38.34 | 24.01 |
| CDX76908 | Canola | mitochondrion | 18.97 | 22.75 |
| CDY13748 | Canola | cytosol, endoplasmic reticulum, nucleus | 9.49 | 15.89 |
| CDY15856 | Canola | plastid | 7.11 | 10.91 |
Protein Annotations
| EnsemblPlants:CDX78751 | EnsemblPlantsGene:GSBRNA2T00130187001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 |
| PFAM:PF00646 | PFscan:PS50181 | ProteinID:CDX78751 | ProteinID:CDX78751.1 | SMART:SM00256 | SUPFAM:SSF81383 |
| TIGRFAMs:TIGR01640 | UniParc:UPI0004EE49EC | MapMan:35.1 | : | : | : |
Description
BnaA03g06630D
Coordinates
chrLK031815:-:2071512..2072642
Molecular Weight (calculated)
28857.5 Da
IEP (calculated)
8.945
GRAVY (calculated)
0.027
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: METQMMKLTK GSVKTDSLPI DLMMEILKRL PVKTLIRFMS VSKLWASTIR SRDFMKLFMD VSLTRPKGLL FLFGRSGCCG LVLSQNTHES SLVTIFRVSC
101: YSPQWSTVSP SVHGLICYAQ ATRLVIYNPC TRRSITLPEI NTWRTRPIRY YLGYDPIENG YKVLCAMLGG GVHDLVKEFR CTETDTSEII LAPLLLRASV
201: VNLVYYDMKT RSEKTVYIRG NTQGNTESIK GYHECCYCVE SFSSNLVENL MFL
101: YSPQWSTVSP SVHGLICYAQ ATRLVIYNPC TRRSITLPEI NTWRTRPIRY YLGYDPIENG YKVLCAMLGG GVHDLVKEFR CTETDTSEII LAPLLLRASV
201: VNLVYYDMKT RSEKTVYIRG NTQGNTESIK GYHECCYCVE SFSSNLVENL MFL
001: MQRQRANDTV TTFRYNTRSS SRHGISNTLR VVESKTSASS PRVRRWRKKV SDDRRSTNSD LLPMDLIKEI LKRLPAKTLA RFLCVSKLWS SIIRSRDLMK
101: LFLTESSARP GRLFFTFRRK DDCFLFSSEE SSVATYLFTI PASGYTNNCS FVHGLICYGT TAYASQLVVY NSSTRRSITL PEIEARSFVL KHLLGYDPID
201: GVYKVLCMTV PRLVLQKKKK LRNNVTDAGE LILAPISLPD PPYYVIYYDP QRQSTRKVVI RGITEHNCKL LRCKKRHPCI LYYVFSSQVE SLMFM
101: LFLTESSARP GRLFFTFRRK DDCFLFSSEE SSVATYLFTI PASGYTNNCS FVHGLICYGT TAYASQLVVY NSSTRRSITL PEIEARSFVL KHLLGYDPID
201: GVYKVLCMTV PRLVLQKKKK LRNNVTDAGE LILAPISLPD PPYYVIYYDP QRQSTRKVVI RGITEHNCKL LRCKKRHPCI LYYVFSSQVE SLMFM
Arabidopsis Description
Putative F-box protein At5g44220 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFG9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.