CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

plastid 1
endoplasmic reticulum 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038513.1-P	Field mustard	nucleus	96.03	49.49
CDX76908	Canola	mitochondrion	65.56	46.92
CDY15856	Canola	plastid	44.37	40.61
CDX89471	Canola	cytosol	61.59	23.02
CDY25598	Canola	cytosol	61.59	22.79
AT2G21930.2	Thale cress	cytosol	47.02	17.93
CDY15855	Canola	cytosol	17.88	10.19
CDX78751	Canola	cytosol	15.89	9.49
CDX70764	Canola	cytosol	0.66	0.68
CDX90297	Canola	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY13748	EnsemblPlantsGene:GSBRNA2T00078181001	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10
PFAM:PF08268	ProteinID:CDY13748	ProteinID:CDY13748.1	SEG:seg	TIGRFAMs:TIGR01640	UniParc:UPI0004EE0A8D
UniProt:A0A078FN04	MapMan:35.1	:	:	:	:

Description

BnaA09g42500DBnaA09g42500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FN04]

Coordinates

chrLK032038:-:138694..139149

Molecular Weight (calculated)

17677.2 Da

IEP (calculated)

7.408

GRAVY (calculated)

-0.357

Length

151 amino acids

Sequence
(BLAST)

001: MSFDVRSEKF DAIRVPQGRA RKFTSMTRYC GKLALIYTVY GKIGLWVLED AVKHEWSSTF FDLPRLSGYN TKFQVFCAVD DGDDAGEFVL APKELQESAF
101: YVLYYDPKKK RVRKVDVEGI TEHEELPLWD KDWKRRTVSI FPGQIENLMF L

Best Arabidopsis Sequence Match ( AT2G21930.1 )
(BLAST)

001: MNCPHLQLKT FAPSVHGLIC HGPPSTLIVS SPRLIVSNPS TRRSIILPKI DANHECIYHH MGYDPIDGDY KVLCMMKGMH VYQRRYLAKE LQVFTLRKGN
101: SWRMVEDFPP HCLCHEDTPD LCINGVLYYV AMLDTASNHA VMSFDVRSEK FDLIKGGPDG DLNPKLTRYE GKPALLFPGS DYRINLWVIE DAAKHEWSKM
201: SYDVSSTSLI RNPYFHHCVF CTNDAGEIVL APDFVRTKTF VVLYYHPKKN TMRSVVIKGI RDRKIPLWDE ASYHRIISVF SGQVDNLMFL

Arabidopsis Description

F-box protein At2g21930 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ06]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.