Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13748 | Canola | cytosol, endoplasmic reticulum, nucleus | 49.49 | 96.03 |
| CDX76908 | Canola | mitochondrion | 59.39 | 82.46 |
| Bra030272.1-P | Field mustard | plastid | 27.3 | 48.48 |
| Bra030237.1-P | Field mustard | cytosol | 43.34 | 31.28 |
| Bra030271.1-P | Field mustard | cytosol | 34.47 | 26.17 |
| AT2G21930.2 | Thale cress | cytosol | 35.15 | 26.01 |
| Bra006410.1-P | Field mustard | cytosol | 30.38 | 23.67 |
| Bra006409.1-P | Field mustard | cytosol | 28.67 | 22.89 |
| Bra010723.1-P | Field mustard | cytosol | 10.92 | 13.33 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EnsemblPlantsGene:Bra038513 | EnsemblPlants:Bra038513.1 | EnsemblPlants:Bra038513.1-P | InterPro:F-box-assoc_dom_typ3 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | UniProt:M4FBP7 | PFAM:PF00646 | PFAM:PF08268 | PFscan:PS50181 | PANTHER:PTHR31790 |
| PANTHER:PTHR31790:SF10 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0002541EE6 | SEG:seg |
Description
AT2G21930 (E=1e-025) | F-box family protein
Coordinates
chrA09:-:5017775..5018793
Molecular Weight (calculated)
33744.2 Da
IEP (calculated)
9.669
GRAVY (calculated)
-0.507
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRKRERSKL ANYRDVDQTS DAIVEATPTS PLTVSKQKNT SDETNSDPFP SDLLMEILKL FPVKTLARLT CVSKLWASTI RRQEFNKLWS SSNQQRRSSS
101: SNTLIFAFKR DKGYGQDYGV LYYGACFGTG TTTSVVGKDR GVMSFDVRSE KFDVIRVPQG RARKFTSMTR YYGKLALIYT VYGKIGLWVL EDAEKNVWSS
201: TFFDLPRLSG YNTKFQVFCA VDDGDDAGEF VLAPKELQES AFYVLYYDPK KKRVRKVDVE GITEHEELPL WDKDWKRRTM SIFPGQIENL MFL
101: SNTLIFAFKR DKGYGQDYGV LYYGACFGTG TTTSVVGKDR GVMSFDVRSE KFDVIRVPQG RARKFTSMTR YYGKLALIYT VYGKIGLWVL EDAEKNVWSS
201: TFFDLPRLSG YNTKFQVFCA VDDGDDAGEF VLAPKELQES AFYVLYYDPK KKRVRKVDVE GITEHEELPL WDKDWKRRTM SIFPGQIENL MFL
001: MNCPHLQLKT FAPSVHGLIC HGPPSTLIVS SPRLIVSNPS TRRSIILPKI DANHECIYHH MGYDPIDGDY KVLCMMKGMH VYQRRYLAKE LQVFTLRKGN
101: SWRMVEDFPP HCLCHEDTPD LCINGVLYYV AMLDTASNHA VMSFDVRSEK FDLIKGGPDG DLNPKLTRYE GKPALLFPGS DYRINLWVIE DAAKHEWSKM
201: SYDVSSTSLI RNPYFHHCVF CTNDAGEIVL APDFVRTKTF VVLYYHPKKN TMRSVVIKGI RDRKIPLWDE ASYHRIISVF SGQVDNLMFL
101: SWRMVEDFPP HCLCHEDTPD LCINGVLYYV AMLDTASNHA VMSFDVRSEK FDLIKGGPDG DLNPKLTRYE GKPALLFPGS DYRINLWVIE DAAKHEWSKM
201: SYDVSSTSLI RNPYFHHCVF CTNDAGEIVL APDFVRTKTF VVLYYHPKKN TMRSVVIKGI RDRKIPLWDE ASYHRIISVF SGQVDNLMFL
Arabidopsis Description
F-box protein At2g21930 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ06]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.