Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90297 | Canola | cytosol, nucleus, plastid | 96.25 | 96.25 |
| AT4G38870.1 | Thale cress | mitochondrion | 62.5 | 35.21 |
| Bra006409.1-P | Field mustard | cytosol | 48.75 | 31.88 |
| Bra006410.1-P | Field mustard | cytosol | 48.33 | 30.85 |
| Bra030237.1-P | Field mustard | cytosol | 45.83 | 27.09 |
| Bra030271.1-P | Field mustard | cytosol | 35.0 | 21.76 |
| Bra038513.1-P | Field mustard | nucleus | 13.33 | 10.92 |
| Bra030272.1-P | Field mustard | plastid | 6.25 | 9.09 |
Protein Annotations
| EnsemblPlants:Bra010723.1 | EnsemblPlants:Bra010723.1-P | EnsemblPlantsGene:Bra010723 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31790 |
| PANTHER:PTHR31790:SF10 | PFAM:PF00646 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0002546B4A |
| UniProt:M4D2M0 | MapMan:35.1 | : | : | : | : |
Description
AT4G38870 (E=2e-085) | F-box family protein
Coordinates
chrA08:+:16118491..16119213
Molecular Weight (calculated)
27231.3 Da
IEP (calculated)
10.080
GRAVY (calculated)
-0.149
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: METPRKKLTN GRVNSYSLSL DLMIEIFKRL PLKTLIRSLC VSKQWASIIR GRYFMKLFLN ESLTRPKSVV FVFRKRYDGL SYSEVSLKIA HELVPSSSDA
101: ASSLATYHVT VHTLQRTKIS PSVHGLICYG PPSELIVYNP CTRRSATLPK VNAGRRAINH YLGYDPINND YKVLCIIRGM PKLSNRRGLA EEILVLTLGS
201: STHQDSWKMM NIQDNIIPHH SPLSEELCIN GVLYYQAFTG
101: ASSLATYHVT VHTLQRTKIS PSVHGLICYG PPSELIVYNP CTRRSATLPK VNAGRRAINH YLGYDPINND YKVLCIIRGM PKLSNRRGLA EEILVLTLGS
201: STHQDSWKMM NIQDNIIPHH SPLSEELCIN GVLYYQAFTG
001: MKTLGFSPKQ KFCARRQTQR WLPEGDRSSS FTPSTMETQR KKFTKVSVNS ELLPVDLIME ILKKLSLKPL IRFLCVSKLW ASIIRDPYFM KLFLNESLKR
101: PKSLVFVFRA QSLGSIFSSV HLKSTREISS SSSSSSASSI TYHVTCYTQQ RMTISPSVHG LICYGPPSSL VIYNPCTRRS ITLPKIKAGR RAINQYIGYD
201: PLDGNYKVVC ITRGMPMLRN RRGLAEEIQV LTLGTRDSSW RMIHDIIPPH SPVSEELCIN GVLYYRAFIG TKLNESAIMS FDVRSEKFDL IKVPCNFRSF
301: SKLAKYEGKL AVIFYEKKTS GIIGLWILED ASNGEWSKKT FALPNLAASS TNSRILKLQK FRTTDADTCE IIFTPSYAHS SLSSAIYCDL KENKVRKFVK
401: EGWTENYLPC NADSVSSTQV ENLMFL
101: PKSLVFVFRA QSLGSIFSSV HLKSTREISS SSSSSSASSI TYHVTCYTQQ RMTISPSVHG LICYGPPSSL VIYNPCTRRS ITLPKIKAGR RAINQYIGYD
201: PLDGNYKVVC ITRGMPMLRN RRGLAEEIQV LTLGTRDSSW RMIHDIIPPH SPVSEELCIN GVLYYRAFIG TKLNESAIMS FDVRSEKFDL IKVPCNFRSF
301: SKLAKYEGKL AVIFYEKKTS GIIGLWILED ASNGEWSKKT FALPNLAASS TNSRILKLQK FRTTDADTCE IIFTPSYAHS SLSSAIYCDL KENKVRKFVK
401: EGWTENYLPC NADSVSSTQV ENLMFL
Arabidopsis Description
Putative F-box protein At4g38870 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0J4]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.