Factsheet for Bra006410.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78751	Canola	cytosol	62.5	92.89
Bra006409.1-P	Field mustard	cytosol	69.95	71.66
Bra010723.1-P	Field mustard	cytosol	30.85	48.33
AT4G38870.1	Thale cress	mitochondrion	44.41	39.2
Bra030237.1-P	Field mustard	cytosol	38.3	35.47
Bra030272.1-P	Field mustard	plastid	15.16	34.55
Bra030271.1-P	Field mustard	cytosol	35.37	34.46
Bra038513.1-P	Field mustard	nucleus	23.67	30.38

Protein Annotations

EnsemblPlants:Bra006410.1	EnsemblPlants:Bra006410.1-P	EnsemblPlantsGene:Bra006410	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000253FDDD	UniProt:M4CQC1	MapMan:35.1	:

Description

AT4G38870 (E=2e-077) | F-box family protein

Coordinates

chrA03:-:3393267..3394397

Molecular Weight (calculated)

42541.2 Da

IEP (calculated)

8.951

GRAVY (calculated)

0.030

Length

376 amino acids

Sequence
(BLAST)

001: METQMMKLTK GSVKTDSLPI DLMMEILKRL PVKTLIRFMS VSKLWASTIR SRDFMKLFMD VSLTRPKGLL FLFGRSGCCG LVLSQNTHES SLVTIFRVSC
101: YSPQWSTVSP SVHGLICYAQ ATRLVIYNPC TRRSITLPEI NTWRTRPIRY YLGYDPIENG YKVLCAMLGG GVHDLVKEFR VLTVGTESSW KMIKNNIISH
201: APFGRELCIS GILYYQAFTG RKKDLTIMSF DVRSEKLYPI KGPNTLMCSK SSKLISYEGK LGVIFYIENG VSLCVLEDAA KEEWSTKTFV LSTAVPPINW
301: NGKCTETDTG EIILAPLLLR TSVVNLVYYD MKTMSENTVY IRGNTQGNTE SIKGYHECCY FVESVSSNLV ENLMFL

Best Arabidopsis Sequence Match ( AT4G38870.1 )
(BLAST)

001: MKTLGFSPKQ KFCARRQTQR WLPEGDRSSS FTPSTMETQR KKFTKVSVNS ELLPVDLIME ILKKLSLKPL IRFLCVSKLW ASIIRDPYFM KLFLNESLKR
101: PKSLVFVFRA QSLGSIFSSV HLKSTREISS SSSSSSASSI TYHVTCYTQQ RMTISPSVHG LICYGPPSSL VIYNPCTRRS ITLPKIKAGR RAINQYIGYD
201: PLDGNYKVVC ITRGMPMLRN RRGLAEEIQV LTLGTRDSSW RMIHDIIPPH SPVSEELCIN GVLYYRAFIG TKLNESAIMS FDVRSEKFDL IKVPCNFRSF
301: SKLAKYEGKL AVIFYEKKTS GIIGLWILED ASNGEWSKKT FALPNLAASS TNSRILKLQK FRTTDADTCE IIFTPSYAHS SLSSAIYCDL KENKVRKFVK
401: EGWTENYLPC NADSVSSTQV ENLMFL

Arabidopsis Description

Putative F-box protein At4g38870 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0J4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.