Factsheet for Bra006409.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70764	Canola	cytosol	31.34	78.77
Bra006410.1-P	Field mustard	cytosol	71.66	69.95
Bra010723.1-P	Field mustard	cytosol	31.88	48.75
AT4G38870.1	Thale cress	mitochondrion	44.96	38.73
Bra030237.1-P	Field mustard	cytosol	39.78	35.96
Bra030272.1-P	Field mustard	plastid	14.99	33.33
Bra030271.1-P	Field mustard	cytosol	33.24	31.61
Bra038513.1-P	Field mustard	nucleus	22.89	28.67

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra006409	EnsemblPlants:Bra006409.1	EnsemblPlants:Bra006409.1-P	ncoils:Coil	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	UniProt:M4CQC0	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000253FDDC	:

Description

AT4G38870 (E=6e-079) | F-box family protein

Coordinates

chrA03:-:3389652..3390755

Molecular Weight (calculated)

42044.3 Da

IEP (calculated)

9.528

GRAVY (calculated)

0.017

Length

367 amino acids

Sequence
(BLAST)

001: METQRMKLIN IKSDSLPLDL IIEILKRLTV KTLIRFLSVS KLWASTIRSR DFMKLFLNVS LTRQKGLLFL LRHGYCGLVP SPKTHETSSF TAFRVSCYSP
101: PWSTVSPSVH GLICYAQATR LVIYNPCTRR SITLPEIDTW RRPIRYYLGY DPLENGYKVL CAMLGGTHDS VKEFRVLTVG TENSWKMITE NNITPHAPFG
201: HALCISGVLF YQAFTGTKMN DLVIMCFDVR SEKLYHIKGP SVFLRRLCSK VISYEGKLAV VFYENNFRLC VLEDAAKEEW STKTFVLSKI VPAIKWYISK
301: SWVTETDTGE AITVPQFLHA SVFNDLVYFD MKTSSKKTVY IRVNTEGNKG YYVESVSSNL VENLMFL

Best Arabidopsis Sequence Match ( AT4G38870.1 )
(BLAST)

001: MKTLGFSPKQ KFCARRQTQR WLPEGDRSSS FTPSTMETQR KKFTKVSVNS ELLPVDLIME ILKKLSLKPL IRFLCVSKLW ASIIRDPYFM KLFLNESLKR
101: PKSLVFVFRA QSLGSIFSSV HLKSTREISS SSSSSSASSI TYHVTCYTQQ RMTISPSVHG LICYGPPSSL VIYNPCTRRS ITLPKIKAGR RAINQYIGYD
201: PLDGNYKVVC ITRGMPMLRN RRGLAEEIQV LTLGTRDSSW RMIHDIIPPH SPVSEELCIN GVLYYRAFIG TKLNESAIMS FDVRSEKFDL IKVPCNFRSF
301: SKLAKYEGKL AVIFYEKKTS GIIGLWILED ASNGEWSKKT FALPNLAASS TNSRILKLQK FRTTDADTCE IIFTPSYAHS SLSSAIYCDL KENKVRKFVK
401: EGWTENYLPC NADSVSSTQV ENLMFL

Arabidopsis Description

Putative F-box protein At4g38870 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0J4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.