Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25598 | Canola | cytosol | 51.26 | 49.75 |
| CDX89471 | Canola | cytosol | 50.51 | 49.51 |
| Bra030237.1-P | Field mustard | cytosol | 50.0 | 48.77 |
| CDY13748 | Canola | cytosol, endoplasmic reticulum, nucleus | 17.93 | 47.02 |
| Bra030272.1-P | Field mustard | plastid | 17.68 | 42.42 |
| CDY15856 | Canola | plastid | 17.68 | 42.42 |
| CDX76908 | Canola | mitochondrion | 21.46 | 40.28 |
| AT4G38870.1 | Thale cress | mitochondrion | 41.67 | 38.73 |
| AT5G44220.1 | Thale cress | plastid | 28.03 | 37.63 |
| Bra038513.1-P | Field mustard | nucleus | 26.01 | 35.15 |
Protein Annotations
| MapMan:35.1 | EntrezGene:816729 | ProteinID:AAD20410.1 | ProteinID:AAT69193.1 | ProteinID:ANM62260.1 | ArrayExpress:AT2G21930 |
| EnsemblPlantsGene:AT2G21930 | RefSeq:AT2G21930 | TAIR:AT2G21930 | RefSeq:AT2G21930-TAIR-G | EnsemblPlants:AT2G21930.2 | EMBL:AY231396 |
| Unigene:At.39504 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | RefSeq:NP_179784.3 | PFAM:PF08268 | PFscan:PS50181 |
| PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | UniProt:Q9SJ06 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 |
| UniParc:UPI000009D2A9 | : | : | : | : | : |
Description
F-box protein At2g21930 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ06]
Coordinates
chr2:-:9347641..9349140
Molecular Weight (calculated)
45183.9 Da
IEP (calculated)
8.808
GRAVY (calculated)
-0.190
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKQRSKKTK ISDDLITCSG NSVQIPFDLI PEILKRLPVK TLARFLSVSK EYTSIIRNRD FMKSYLINSS TRPQSLIFTI AGGGIHCFFS LIDQGESTSS
101: SKPTYLMNCP HLQLKTFAPS VHGLICHGPP STLIVSSPRL IVSNPSTRRS IILPKIDANH ECIYHHMGYD PIDGDYKVLC MMKGMHVYQR RYLAKELQVF
201: TLRKGNSWRM VEDFPPHCLC HEDTPDLCIN GVLYYVAMLD TASNHAVMSF DVRSEKFDLI KGGPDGDLNP KLTRYEGKPA LLFPGSDYRI NLWVIEDAAK
301: HEWSKMSYDV SSTSLIRNPY FHHCVFCTND AGEIVLAPDF VRTKTFVVLY YHPKKNTMRS VVIKGIRDRK IPLWDEASYH RIISVFSGQV DNLMFL
101: SKPTYLMNCP HLQLKTFAPS VHGLICHGPP STLIVSSPRL IVSNPSTRRS IILPKIDANH ECIYHHMGYD PIDGDYKVLC MMKGMHVYQR RYLAKELQVF
201: TLRKGNSWRM VEDFPPHCLC HEDTPDLCIN GVLYYVAMLD TASNHAVMSF DVRSEKFDLI KGGPDGDLNP KLTRYEGKPA LLFPGSDYRI NLWVIEDAAK
301: HEWSKMSYDV SSTSLIRNPY FHHCVFCTND AGEIVLAPDF VRTKTFVVLY YHPKKNTMRS VVIKGIRDRK IPLWDEASYH RIISVFSGQV DNLMFL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.