Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15855 | Canola | cytosol | 40.34 | 44.91 |
| Bra030271.1-P | Field mustard | cytosol | 41.02 | 31.35 |
| AT2G21930.2 | Thale cress | cytosol | 37.63 | 28.03 |
| AT4G38870.1 | Thale cress | mitochondrion | 37.97 | 26.29 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:834445 | ProteinID:AED95076.1 | ArrayExpress:AT5G44220 | EnsemblPlantsGene:AT5G44220 |
| RefSeq:AT5G44220 | TAIR:AT5G44220 | RefSeq:AT5G44220-TAIR-G | EnsemblPlants:AT5G44220.1 | TAIR:AT5G44220.1 | Unigene:At.55348 |
| ProteinID:BAB10989.1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001810 | RefSeq:NP_199235.1 | PFAM:PF00646 | PFscan:PS50181 | PANTHER:PTHR31790 |
| PANTHER:PTHR31790:SF10 | UniProt:Q9FFG9 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000A088B |
| SEG:seg | : | : | : | : | : |
Description
Putative F-box protein At5g44220 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFG9]
Coordinates
chr5:+:17810477..17811364
Molecular Weight (calculated)
34070.5 Da
IEP (calculated)
10.525
GRAVY (calculated)
-0.275
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRQRANDTV TTFRYNTRSS SRHGISNTLR VVESKTSASS PRVRRWRKKV SDDRRSTNSD LLPMDLIKEI LKRLPAKTLA RFLCVSKLWS SIIRSRDLMK
101: LFLTESSARP GRLFFTFRRK DDCFLFSSEE SSVATYLFTI PASGYTNNCS FVHGLICYGT TAYASQLVVY NSSTRRSITL PEIEARSFVL KHLLGYDPID
201: GVYKVLCMTV PRLVLQKKKK LRNNVTDAGE LILAPISLPD PPYYVIYYDP QRQSTRKVVI RGITEHNCKL LRCKKRHPCI LYYVFSSQVE SLMFM
101: LFLTESSARP GRLFFTFRRK DDCFLFSSEE SSVATYLFTI PASGYTNNCS FVHGLICYGT TAYASQLVVY NSSTRRSITL PEIEARSFVL KHLLGYDPID
201: GVYKVLCMTV PRLVLQKKKK LRNNVTDAGE LILAPISLPD PPYYVIYYDP QRQSTRKVVI RGITEHNCKL LRCKKRHPCI LYYVFSSQVE SLMFM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.