CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030237.1-P	Field mustard	cytosol	93.87	94.33
CDX89471	Canola	cytosol	88.48	89.36
CDY15856	Canola	plastid	26.23	64.85
CDY13748	Canola	cytosol, endoplasmic reticulum, nucleus	22.79	61.59
AT2G21930.2	Thale cress	cytosol	49.75	51.26
CDX76908	Canola	mitochondrion	25.98	50.24
CDX90297	Canola	cytosol, nucleus, plastid	26.47	45.0
CDX70764	Canola	cytosol	15.93	44.52
CDX78751	Canola	cytosol	24.02	38.74
CDY15855	Canola	cytosol	23.53	36.23

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078GLX7	EnsemblPlants:CDY25598	ProteinID:CDY25598	ProteinID:CDY25598.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00032866001	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268
PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EDBD3F	SEG:seg	:	:	:	:

Description

BnaA04g12900DBnaA04g12900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLX7]

Coordinates

chrLK032177:-:154762..155988

Molecular Weight (calculated)

46642.1 Da

IEP (calculated)

9.518

GRAVY (calculated)

-0.418

Length

408 amino acids

Sequence
(BLAST)

001: MERQKSKLAK NNNISDDVRT NREGSIPLDL IPEILKELPV KTLARFLCVS KPWSSIIRNR DFVKSHLIKS SKTTHTQGLI FTFKRKRHGK HFFFSSSSQR
101: QDGGGESSLS CAASYHMKCH SQPYTTSTPS VHGLICYGPP SKLMVYNPST RRSIALPNVD AHRLRMYHYL GYDPIDGDYK MLCLSRGMHV RRGRGLAHKI
201: QVLTLGNGSS WRMIEDCPPP HSPESPHICI DGVLYYGGYL DTSTRLLRKD HVVMSFDVRS EKFDMIKVPT ERATRFTRMT RYDGKLALMF TGYGGFGCGY
301: SGYIELWVLE DAARHEWSNK NFVLPRLASR DTLFQVFCGI DGSGEFVLAP ETLRPPTFYV LYYDPNNNSM RRVDIEGIAD KKLLFWDDDS DRRTISIFPG
401: HVENLLFL

Best Arabidopsis Sequence Match ( AT2G21930.2 )
(BLAST)

001: MEKQRSKKTK ISDDLITCSG NSVQIPFDLI PEILKRLPVK TLARFLSVSK EYTSIIRNRD FMKSYLINSS TRPQSLIFTI AGGGIHCFFS LIDQGESTSS
101: SKPTYLMNCP HLQLKTFAPS VHGLICHGPP STLIVSSPRL IVSNPSTRRS IILPKIDANH ECIYHHMGYD PIDGDYKVLC MMKGMHVYQR RYLAKELQVF
201: TLRKGNSWRM VEDFPPHCLC HEDTPDLCIN GVLYYVAMLD TASNHAVMSF DVRSEKFDLI KGGPDGDLNP KLTRYEGKPA LLFPGSDYRI NLWVIEDAAK
301: HEWSKMSYDV SSTSLIRNPY FHHCVFCTND AGEIVLAPDF VRTKTFVVLY YHPKKNTMRS VVIKGIRDRK IPLWDEASYH RIISVFSGQV DNLMFL

Arabidopsis Description

F-box protein At2g21930 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ06]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.