Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014190.1-P | Field mustard | plasma membrane | 96.99 | 96.99 |
| CDY16500 | Canola | plasma membrane | 93.98 | 93.98 |
| AT1G49470.1 | Thale cress | plasma membrane | 85.95 | 85.1 |
| KRH24549 | Soybean | plasma membrane | 55.18 | 55.93 |
| KRH29555 | Soybean | extracellular, plasma membrane | 54.52 | 55.07 |
| PGSC0003DMT400015915 | Potato | extracellular, plasma membrane | 47.83 | 48.81 |
| Solyc10g050430.1.1 | Tomato | extracellular, plasma membrane | 47.16 | 48.12 |
| GSMUA_Achr7P12360_001 | Banana | plasma membrane | 46.82 | 47.78 |
| VIT_03s0063g01730.t01 | Wine grape | mitochondrion | 56.19 | 45.04 |
| Os08t0462900-01 | Rice | extracellular, plasma membrane | 46.15 | 44.81 |
| OQU80610 | Sorghum | plasma membrane | 42.81 | 36.99 |
| CDY26121 | Canola | extracellular, plasma membrane, vacuole | 37.12 | 35.13 |
| CDY65755 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.78 | 33.91 |
| CDY10576 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.78 | 33.91 |
| CDY10579 | Canola | plasma membrane | 32.44 | 33.56 |
| CDY08230 | Canola | plasma membrane | 31.44 | 32.87 |
| CDY65753 | Canola | plasma membrane | 32.44 | 31.8 |
| CDY44949 | Canola | extracellular, plasma membrane | 32.11 | 31.79 |
| CDY42309 | Canola | plasma membrane | 31.77 | 31.46 |
| CDY10580 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 29.43 | 29.53 |
| CDY35545 | Canola | extracellular, plasma membrane | 25.42 | 29.23 |
| CDY29937 | Canola | plasma membrane | 25.75 | 29.17 |
| CDY37527 | Canola | endoplasmic reticulum, extracellular, plasma membrane, plastid | 18.06 | 17.14 |
| CDY49048 | Canola | plasma membrane | 17.73 | 16.83 |
Protein Annotations
| EnsemblPlants:CDX77245 | EnsemblPlantsGene:GSBRNA2T00127928001 | GO:A0A078CK16 | InterPro:DUF716_TMEM45 | PANTHER:PTHR16007 | PANTHER:PTHR16007:SF14 |
| PFAM:PF04819 | ProteinID:CDX77245 | ProteinID:CDX77245.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EC389E |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC08g02900D
Coordinates
chrLK031810:-:168293..169364
Molecular Weight (calculated)
33397.9 Da
IEP (calculated)
7.733
GRAVY (calculated)
0.592
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTFLGHFVP GLSLALLGLW HLINTIRSYC LKGPETFFAK FWFPFPKLKH LELVLILFFS FFAIILLTID FPDFNFSSFK PDNLEHASMF LHLIIFACFA
101: LFCELTLSSD LFSGIIGILS ASVFAQELFL LHYHSTDHLG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALVLSVSV MFQGCWFLNM GFMLWVPRYV
201: PRGCVSKTTS SDTRSVVHSS AVACESPGAE VRAKALANLQ FSWILSAILI ITCALCFKFS CKVMLPKNWS SSEYERLCRQ GSDRSPALTV EVSPSSDQK
101: LFCELTLSSD LFSGIIGILS ASVFAQELFL LHYHSTDHLG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALVLSVSV MFQGCWFLNM GFMLWVPRYV
201: PRGCVSKTTS SDTRSVVHSS AVACESPGAE VRAKALANLQ FSWILSAILI ITCALCFKFS CKVMLPKNWS SSEYERLCRQ GSDRSPALTV EVSPSSDQK
001: MGTFLGHFVP GLSLALLGLW HLFNTIRSYC LKGPEAFSAK FWFPFPKLKH LELILILFFS FLSITLLTLD FPNFNFSSLK PDNLEHASMF LHLIIFACFA
101: LFCELTLCSD LFSGLIGVLS ASVFAQELFL LHFHSTDHSG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALFLPISV MFQGCWFLNM GFMLWIPEYV
201: PRGCVSNMST STDNNRRSVY HSGAVACESP GAEIRAKALA NLQFSWMLSA ILIITCALCL KYSGKVVLPK IRSSLEYERL CRQGSDRSAT VTVEAPASSD
301: QQ
101: LFCELTLCSD LFSGLIGVLS ASVFAQELFL LHFHSTDHSG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALFLPISV MFQGCWFLNM GFMLWIPEYV
201: PRGCVSNMST STDNNRRSVY HSGAVACESP GAEIRAKALA NLQFSWMLSA ILIITCALCL KYSGKVVLPK IRSSLEYERL CRQGSDRSAT VTVEAPASSD
301: QQ
Arabidopsis Description
At1g49470 [Source:UniProtKB/TrEMBL;Acc:Q9XIB3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.